Difference between revisions of "RXN1F-150"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-150 RXN1F-150] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6982 PWY-6982] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-150 RXN1F-150] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** umbelliferone biosynthesis
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** [http://enzyme.expasy.org/EC/5.5.1.19 EC-5.5.1.19]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''3''' reactions in the full pathway
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* With identifiers:
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* [[4-COUMARATE--COA-LIGASE-RXN]]
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** 1 [[CPD1F-114]][c] '''=>''' 1 [[CPD1F-126]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12963 RXN-12963]
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** 1 all-trans-lycopene[c] '''=>''' 1 γ-carotene[c]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12965 RXN-12965]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[CHC_T00010245001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00010004001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00009131001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00008616001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00002318001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008813001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00008663001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00009303001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00009062001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00009401001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00003979001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00008672001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00009499001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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== Pathways  ==
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* [[PWY-5943]], β-carotene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5943 PWY-5943]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7591]], okenone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7591 PWY-7591]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-arabidopsis_thaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33090}}
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* RHEA:
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{{#set: common name=umbelliferone biosynthesis}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32222 32222]
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{{#set: reaction found=1}}
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* LIGAND-RXN:
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{{#set: reaction not found=3}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05341 R05341]
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{{#set: completion rate=33.0}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-5.5.1.19}}
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{{#set: gene associated=CHC_T00010245001_1|CHC_T00010004001_1|CHC_T00009131001_1|CHC_T00008616001_1|CHC_T00002318001_1|CHC_T00008813001_1|CHC_T00008663001_1|CHC_T00009303001_1|CHC_T00009062001_1|CHC_T00009401001_1|CHC_T00003979001_1|CHC_T00008672001_1|CHC_T00009499001_1}}
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{{#set: in pathway=PWY-5943|PWY-7591}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
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{{#set: reconstruction tool=pantograph}}

Revision as of 15:28, 23 May 2018

Reaction RXN1F-150

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 all-trans-lycopene[c] => 1 γ-carotene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5943, β-carotene biosynthesis: PWY-5943
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7591, okenone biosynthesis: PWY-7591
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN1F-150&oldid=14412"