Difference between revisions of "RXN-7904"

Latest revision as of 16:43, 9 January 2019

Reaction RXN-7904

direction:
- LEFT-TO-RIGHT
common name:
- long-chain-fatty-acid-CoA ligase
ec number:
- EC-6.2.1.3
Synonym(s):

Reaction Formula

With identifiers:
- 1 ATP[c] + 1 CO-A[c] + 1 Long-Chain-Fatty-Acids[c] => 1 Long-Chain-Acyl-CoAs[c] + 1 AMP[c] + 1 PPI[c]
With common name(s):
- 1 ATP[c] + 1 coenzyme A[c] + 1 a long-chain fatty acid[c] => 1 a long-chain acyl-CoA[c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Gene: CHC_T00008811001_1
- Source: orthology-galdieria.sulphuraria
Gene: CHC_T00008160001_1
- Source: orthology-galdieria.sulphuraria
Gene: CHC_T00008500001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
Gene: CHC_T00009428001
- Source: annotation-original_genome
  - Assignment: AUTOMATED-NAME-MATCH
Gene: CHC_T00008811001
- Source: annotation-original_genome
  - Assignment: AUTOMATED-NAME-MATCH
Gene: CHC_T00009428001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus

Pathways

PWY-6803, phosphatidylcholine acyl editing: PWY-6803
- 2 reactions found over 4 reactions in the full pathway
PWY-5885, wax esters biosynthesis II: PWY-5885
- 1 reactions found over 4 reactions in the full pathway
PWY-5143, long-chain fatty acid activation: PWY-5143
- 1 reactions found over 1 reactions in the full pathway
PWY-6873, long chain fatty acid ester synthesis (engineered): PWY-6873
- 2 reactions found over 4 reactions in the full pathway
PWY-7033, alkane biosynthesis II: PWY-7033
- 1 reactions found over 3 reactions in the full pathway

Reconstruction information

Category: orthology
- Source: orthology-galdieria.sulphuraria
  - Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
  - Tool: pantograph
Category: annotation
- Source: annotation-original_genome
  - Tool: pathwaytools

External links

LIGAND-RXN:
- R00390
UNIPROT:
- O60135
- Q9X7Z0
- Q9X7Y5
- Q9ZBW6
- Q9T0A0
- Q9T009
- Q96338
- Q96538
- Q96537
- O15840
- O81614
- P73004
- P47912
- Q8JZR0
- P69452
- P69451
- Q02602
- P30624
- P33124
- P33121
- Q9JYJ7
- O51539
- O30039
- P44446
- Q9JTK0
- Q9CHR0
- Q9YCF0
- P94547
- Q9RTR4
- O83181
- Q10776
- Q9RYK3
- P39002
- O51162
- P39518
- P18163
PIR:
- A36275
- A54901
- A70117
- B54901
- B75585
- C70762
- C71361
- C75364
- D69649
- D72605
- F86707
- G81798
- H64041
- H69274
- H70173
- H81068
- JE0262
- JX0202
- JX0205
- S23052
- S23467
- S41589
- S49487
- S56060
- S74984
- T01875
- T02834
- T07928
- T07929
- T07944
- T08182
- T08904
- T34994
- T35430
- T35513
- T39766

@@ Line 34: / Line 34: @@
 ** Source: [[orthology-ectocarpus_siliculosus]]
 == Pathways  ==
-* [[PWY-5143]], long-chain fatty acid activation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5143 PWY-5143]
-** '''1''' reactions found over '''1''' reactions in the full pathway
 * [[PWY-6803]], phosphatidylcholine acyl editing: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6803 PWY-6803]
 ** '''2''' reactions found over '''4''' reactions in the full pathway
+* [[PWY-5885]], wax esters biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5885 PWY-5885]
+** '''1''' reactions found over '''4''' reactions in the full pathway
+* [[PWY-5143]], long-chain fatty acid activation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5143 PWY-5143]
+** '''1''' reactions found over '''1''' reactions in the full pathway
 * [[PWY-6873]], long chain fatty acid ester synthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6873 PWY-6873]
 ** '''2''' reactions found over '''4''' reactions in the full pathway
 * [[PWY-7033]], alkane biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7033 PWY-7033]
 ** '''1''' reactions found over '''3''' reactions in the full pathway
-* [[PWY-5885]], wax esters biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5885 PWY-5885]
-** '''1''' reactions found over '''4''' reactions in the full pathway
 == Reconstruction information  ==
 * Category: [[orthology]]
+** Source: [[orthology-galdieria.sulphuraria]]
+*** Tool: [[pantograph]]
 ** Source: [[orthology-ectocarpus_siliculosus]]
-*** Tool: [[pantograph]]
-** Source: [[orthology-galdieria.sulphuraria]]
 *** Tool: [[pantograph]]
 * Category: [[annotation]]
@@ Line 54: / Line 54: @@
 *** Tool: [[pathwaytools]]
 == External links  ==
-* PIR:
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A36275 A36275]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54901 A54901]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A70117 A70117]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54901 B54901]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B75585 B75585]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C70762 C70762]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C71361 C71361]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C75364 C75364]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69649 D69649]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D72605 D72605]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86707 F86707]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81798 G81798]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64041 H64041]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H69274 H69274]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70173 H70173]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81068 H81068]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JE0262 JE0262]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0202 JX0202]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0205 JX0205]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23052 S23052]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23467 S23467]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41589 S41589]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49487 S49487]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56060 S56060]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74984 S74984]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T01875 T01875]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02834 T02834]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07928 T07928]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07929 T07929]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07944 T07944]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08182 T08182]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08904 T08904]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T34994 T34994]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35430 T35430]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35513 T35513]
-** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39766 T39766]
 * LIGAND-RXN:
 ** [http://www.genome.jp/dbget-bin/www_bget?R00390 R00390]
@@ Line 130: / Line 93: @@
 ** [http://www.uniprot.org/uniprot/P39518 P39518]
 ** [http://www.uniprot.org/uniprot/P18163 P18163]
+* PIR:
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A36275 A36275]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54901 A54901]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A70117 A70117]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54901 B54901]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B75585 B75585]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C70762 C70762]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C71361 C71361]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C75364 C75364]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69649 D69649]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D72605 D72605]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86707 F86707]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81798 G81798]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64041 H64041]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H69274 H69274]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70173 H70173]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81068 H81068]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JE0262 JE0262]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0202 JX0202]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0205 JX0205]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23052 S23052]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23467 S23467]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41589 S41589]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49487 S49487]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56060 S56060]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74984 S74984]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T01875 T01875]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02834 T02834]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07928 T07928]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07929 T07929]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07944 T07944]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08182 T08182]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08904 T08904]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T34994 T34994]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35430 T35430]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35513 T35513]
+** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39766 T39766]
 {{#set: direction=LEFT-TO-RIGHT}}
 {{#set: common name=long-chain-fatty-acid-CoA ligase}}
 {{#set: ec number=EC-6.2.1.3}}
 {{#set: gene associated=CHC_T00008811001_1|CHC_T00008160001_1|CHC_T00008500001_1|CHC_T00009428001|CHC_T00008811001|CHC_T00009428001_1}}
-{{#set: in pathway=PWY-5143|PWY-6803|PWY-6873|PWY-7033|PWY-5885}}
+{{#set: in pathway=PWY-6803|PWY-5885|PWY-5143|PWY-6873|PWY-7033}}
 {{#set: reconstruction category=orthology|annotation}}
-{{#set: reconstruction source=annotation-original_genome|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
+{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
 {{#set: reconstruction tool=pantograph|pathwaytools}}

Difference between revisions of "RXN-7904"

Latest revision as of 16:43, 9 January 2019

Contents

Reaction RXN-7904

Reaction Formula

Genes associated with this reaction

Pathways

Reconstruction information

External links

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