Difference between revisions of "FPPSYN-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPPSYN-RXN FPPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/E...") |
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** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
== Pathways == | == Pathways == | ||
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* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123] | * [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123] | ||
** '''3''' reactions found over '''3''' reactions in the full pathway | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
| − | * [[PWY- | + | * [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859] |
| − | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102] | * [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102] | ||
** '''3''' reactions found over '''6''' reactions in the full pathway | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736] | ||
| + | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721] | ||
| + | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-galdieria.sulphuraria]] | ||
| + | *** Tool: [[pantograph]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
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*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361] | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361] | ||
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* UNIPROT: | * UNIPROT: | ||
** [http://www.uniprot.org/uniprot/P08524 P08524] | ** [http://www.uniprot.org/uniprot/P08524 P08524] | ||
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** [http://www.uniprot.org/uniprot/O65004 O65004] | ** [http://www.uniprot.org/uniprot/O65004 O65004] | ||
** [http://www.uniprot.org/uniprot/O14230 O14230] | ** [http://www.uniprot.org/uniprot/O14230 O14230] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
{{#set: ec number=EC-2.5.1.10}} | {{#set: ec number=EC-2.5.1.10}} | ||
{{#set: gene associated=CHC_T00008265001_1|CHC_T00002324001_1|CHC_T00006851001_1}} | {{#set: gene associated=CHC_T00008265001_1|CHC_T00002324001_1|CHC_T00006851001_1}} | ||
| − | {{#set: in pathway=PWY- | + | {{#set: in pathway=PWY-5123|PWY-6859|PWY-7102|PWY-7736|PWY-7721}} |
{{#set: reconstruction category=orthology}} | {{#set: reconstruction category=orthology}} | ||
| − | {{#set: reconstruction source=orthology- | + | {{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph}} | {{#set: reconstruction tool=pantograph}} | ||
Latest revision as of 16:51, 9 January 2019
Contents
Reaction FPPSYN-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 DELTA3-ISOPENTENYL-PP[c] + 1 GERANYL-PP[c] => 1 PPI[c] + 1 FARNESYL-PP[c]
- With common name(s):
- 1 isopentenyl diphosphate[c] + 1 geranyl diphosphate[c] => 1 diphosphate[c] + 1 (2E,6E)-farnesyl diphosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: CHC_T00008265001_1
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00002324001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00006851001_1
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
Pathways
- PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
- 3 reactions found over 3 reactions in the full pathway
- PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
- 3 reactions found over 4 reactions in the full pathway
- PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
- 3 reactions found over 6 reactions in the full pathway
- PWY-7736, stellatic acid biosynthesis: PWY-7736
- 3 reactions found over 8 reactions in the full pathway
- PWY-7721, methyl phomopsenoate biosynthesis: PWY-7721
- 2 reactions found over 4 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-galdieria.sulphuraria
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-galdieria.sulphuraria
External links
- RHEA:
- UNIPROT:
- LIGAND-RXN:
