Difference between revisions of "MALATE-DEH-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALATE-DEH-RXN MALATE-DEH-RXN] == * direction: ** REVERSIBLE * common name: ** malate dehydrogenase...")
 
Line 12: Line 12:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[MAL]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[MAL]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[OXALACETIC_ACID]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (S)-malate[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 1 oxaloacetate[c] '''+''' 1 H+[c]
+
** 1 (S)-malate[c] '''+''' 1 NAD+[c] '''<=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 oxaloacetate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[CHC_T00008733001]]
+
* Gene: [[CHC_T00009292001_1]]
−
** Source: [[annotation-original_genome]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
* Gene: [[CHC_T00008733001_1]]
−
* Gene: [[CHC_T00009350001_1]]
+
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
Line 27: Line 26:
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
* Gene: [[CHC_T00009173001_1]]
+
* Gene: [[CHC_T00008600001_1]]
 
** Source: [[orthology-galdieria.sulphuraria]]
 
** Source: [[orthology-galdieria.sulphuraria]]
−
* Gene: [[CHC_T00009292001_1]]
 
−
** Source: [[orthology-galdieria.sulphuraria]]
 
−
* Gene: [[CHC_T00008733001_1]]
 
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
Line 37: Line 33:
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
* Gene: [[CHC_T00008600001_1]]
+
* Gene: [[CHC_T00008733001]]
−
** Source: [[orthology-galdieria.sulphuraria]]
+
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00009350001_1]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
Line 44: Line 42:
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
* Gene: [[CHC_T00009173001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[P108-PWY]], pyruvate fermentation to propanoate I: [http://metacyc.org/META/NEW-IMAGE?object=P108-PWY P108-PWY]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 
** '''11''' reactions found over '''16''' reactions in the full pathway
 
** '''11''' reactions found over '''16''' reactions in the full pathway
−
* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-561 PWY-561]
+
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
** '''10''' reactions found over '''11''' reactions in the full pathway
 
** '''10''' reactions found over '''11''' reactions in the full pathway
 
* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
 
* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
 
** '''6''' reactions found over '''13''' reactions in the full pathway
 
** '''6''' reactions found over '''13''' reactions in the full pathway
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
+
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
+
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''9''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
+
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
−
** '''6''' reactions found over '''12''' reactions in the full pathway
+
** '''9''' reactions found over '''19''' reactions in the full pathway
−
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
+
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
+
−
** '''8''' reactions found over '''11''' reactions in the full pathway
+
 
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 
** '''10''' reactions found over '''12''' reactions in the full pathway
 
** '''10''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
 
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
** '''8''' reactions found over '''12''' reactions in the full pathway
 
** '''8''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
+
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
−
** '''9''' reactions found over '''18''' reactions in the full pathway
+
** '''6''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[P108-PWY]], pyruvate fermentation to propanoate I: [http://metacyc.org/META/NEW-IMAGE?object=P108-PWY P108-PWY]
+
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
−
* [[MALATE-ASPARTATE-SHUTTLE-PWY]], L-aspartate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=MALATE-ASPARTATE-SHUTTLE-PWY MALATE-ASPARTATE-SHUTTLE-PWY]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
 
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 
** '''11''' reactions found over '''11''' reactions in the full pathway
 
** '''11''' reactions found over '''11''' reactions in the full pathway
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
+
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[MALATE-ASPARTATE-SHUTTLE-PWY]], L-aspartate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=MALATE-ASPARTATE-SHUTTLE-PWY MALATE-ASPARTATE-SHUTTLE-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-561 PWY-561]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-galdieria.sulphuraria]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 99: Line 99:
 
* RHEA:
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21432 21432]
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21432 21432]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q07841 Q07841]
 +
** [http://www.uniprot.org/uniprot/P33163 P33163]
 +
** [http://www.uniprot.org/uniprot/P44427 P44427]
 +
** [http://www.uniprot.org/uniprot/Q9PHY2 Q9PHY2]
 +
** [http://www.uniprot.org/uniprot/P22133 P22133]
 +
** [http://www.uniprot.org/uniprot/P17505 P17505]
 +
** [http://www.uniprot.org/uniprot/P32419 P32419]
 +
** [http://www.uniprot.org/uniprot/P25077 P25077]
 +
** [http://www.uniprot.org/uniprot/P14152 P14152]
 +
** [http://www.uniprot.org/uniprot/Q8R1P0 Q8R1P0]
 +
** [http://www.uniprot.org/uniprot/P19446 P19446]
 +
** [http://www.uniprot.org/uniprot/P17783 P17783]
 +
** [http://www.uniprot.org/uniprot/P04636 P04636]
 +
** [http://www.uniprot.org/uniprot/P58408 P58408]
 +
** [http://www.uniprot.org/uniprot/Q58820 Q58820]
 +
** [http://www.uniprot.org/uniprot/P49814 P49814]
 +
** [http://www.uniprot.org/uniprot/Q93ZA7 Q93ZA7]
 +
** [http://www.uniprot.org/uniprot/Q7M4Y9 Q7M4Y9]
 +
** [http://www.uniprot.org/uniprot/Q7M4Z0 Q7M4Z0]
 +
** [http://www.uniprot.org/uniprot/P10887 P10887]
 +
** [http://www.uniprot.org/uniprot/P11386 P11386]
 +
** [http://www.uniprot.org/uniprot/P19983 P19983]
 +
** [http://www.uniprot.org/uniprot/P19981 P19981]
 +
** [http://www.uniprot.org/uniprot/P19979 P19979]
 +
** [http://www.uniprot.org/uniprot/P19977 P19977]
 +
** [http://www.uniprot.org/uniprot/P19982 P19982]
 +
** [http://www.uniprot.org/uniprot/P19978 P19978]
 +
** [http://www.uniprot.org/uniprot/P19980 P19980]
 +
** [http://www.uniprot.org/uniprot/P16142 P16142]
 +
** [http://www.uniprot.org/uniprot/P46487 P46487]
 +
** [http://www.uniprot.org/uniprot/P46488 P46488]
 +
** [http://www.uniprot.org/uniprot/Q43744 Q43744]
 +
** [http://www.uniprot.org/uniprot/Q59202 Q59202]
 +
** [http://www.uniprot.org/uniprot/Q55383 Q55383]
 +
** [http://www.uniprot.org/uniprot/Q42972 Q42972]
 +
** [http://www.uniprot.org/uniprot/O81278 O81278]
 +
** [http://www.uniprot.org/uniprot/O81279 O81279]
 +
** [http://www.uniprot.org/uniprot/O65363 O65363]
 +
** [http://www.uniprot.org/uniprot/O65364 O65364]
 +
** [http://www.uniprot.org/uniprot/O81609 O81609]
 +
** [http://www.uniprot.org/uniprot/Q43743 Q43743]
 +
** [http://www.uniprot.org/uniprot/Q42686 Q42686]
 +
** [http://www.uniprot.org/uniprot/P93106 P93106]
 +
** [http://www.uniprot.org/uniprot/Q04820 Q04820]
 +
** [http://www.uniprot.org/uniprot/O48903 O48903]
 +
** [http://www.uniprot.org/uniprot/O48904 O48904]
 +
** [http://www.uniprot.org/uniprot/O48905 O48905]
 +
** [http://www.uniprot.org/uniprot/O48906 O48906]
 +
** [http://www.uniprot.org/uniprot/O24047 O24047]
 +
** [http://www.uniprot.org/uniprot/Q9XTB4 Q9XTB4]
 +
** [http://www.uniprot.org/uniprot/P50917 P50917]
 +
** [http://www.uniprot.org/uniprot/Q49981 Q49981]
 +
** [http://www.uniprot.org/uniprot/Q9ZP05 Q9ZP05]
 +
** [http://www.uniprot.org/uniprot/Q9ZP06 Q9ZP06]
 +
** [http://www.uniprot.org/uniprot/Q9SN86 Q9SN86]
 
* PIR:
 
* PIR:
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A32472 A32472]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A32472 A32472]
Line 162: Line 218:
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R00342 R00342]
 
** [http://www.genome.jp/dbget-bin/www_bget?R00342 R00342]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q07841 Q07841]
 
−
** [http://www.uniprot.org/uniprot/P33163 P33163]
 
−
** [http://www.uniprot.org/uniprot/P44427 P44427]
 
−
** [http://www.uniprot.org/uniprot/Q9PHY2 Q9PHY2]
 
−
** [http://www.uniprot.org/uniprot/P22133 P22133]
 
−
** [http://www.uniprot.org/uniprot/P17505 P17505]
 
−
** [http://www.uniprot.org/uniprot/P32419 P32419]
 
−
** [http://www.uniprot.org/uniprot/P25077 P25077]
 
−
** [http://www.uniprot.org/uniprot/P14152 P14152]
 
−
** [http://www.uniprot.org/uniprot/Q8R1P0 Q8R1P0]
 
−
** [http://www.uniprot.org/uniprot/P19446 P19446]
 
−
** [http://www.uniprot.org/uniprot/P17783 P17783]
 
−
** [http://www.uniprot.org/uniprot/P04636 P04636]
 
−
** [http://www.uniprot.org/uniprot/P58408 P58408]
 
−
** [http://www.uniprot.org/uniprot/Q58820 Q58820]
 
−
** [http://www.uniprot.org/uniprot/P49814 P49814]
 
−
** [http://www.uniprot.org/uniprot/Q93ZA7 Q93ZA7]
 
−
** [http://www.uniprot.org/uniprot/Q7M4Y9 Q7M4Y9]
 
−
** [http://www.uniprot.org/uniprot/Q7M4Z0 Q7M4Z0]
 
−
** [http://www.uniprot.org/uniprot/P10887 P10887]
 
−
** [http://www.uniprot.org/uniprot/P11386 P11386]
 
−
** [http://www.uniprot.org/uniprot/P19983 P19983]
 
−
** [http://www.uniprot.org/uniprot/P19981 P19981]
 
−
** [http://www.uniprot.org/uniprot/P19979 P19979]
 
−
** [http://www.uniprot.org/uniprot/P19977 P19977]
 
−
** [http://www.uniprot.org/uniprot/P19982 P19982]
 
−
** [http://www.uniprot.org/uniprot/P19978 P19978]
 
−
** [http://www.uniprot.org/uniprot/P19980 P19980]
 
−
** [http://www.uniprot.org/uniprot/P16142 P16142]
 
−
** [http://www.uniprot.org/uniprot/P46487 P46487]
 
−
** [http://www.uniprot.org/uniprot/P46488 P46488]
 
−
** [http://www.uniprot.org/uniprot/Q43744 Q43744]
 
−
** [http://www.uniprot.org/uniprot/Q59202 Q59202]
 
−
** [http://www.uniprot.org/uniprot/Q55383 Q55383]
 
−
** [http://www.uniprot.org/uniprot/Q42972 Q42972]
 
−
** [http://www.uniprot.org/uniprot/O81278 O81278]
 
−
** [http://www.uniprot.org/uniprot/O81279 O81279]
 
−
** [http://www.uniprot.org/uniprot/O65363 O65363]
 
−
** [http://www.uniprot.org/uniprot/O65364 O65364]
 
−
** [http://www.uniprot.org/uniprot/O81609 O81609]
 
−
** [http://www.uniprot.org/uniprot/Q43743 Q43743]
 
−
** [http://www.uniprot.org/uniprot/Q42686 Q42686]
 
−
** [http://www.uniprot.org/uniprot/P93106 P93106]
 
−
** [http://www.uniprot.org/uniprot/Q04820 Q04820]
 
−
** [http://www.uniprot.org/uniprot/O48903 O48903]
 
−
** [http://www.uniprot.org/uniprot/O48904 O48904]
 
−
** [http://www.uniprot.org/uniprot/O48905 O48905]
 
−
** [http://www.uniprot.org/uniprot/O48906 O48906]
 
−
** [http://www.uniprot.org/uniprot/O24047 O24047]
 
−
** [http://www.uniprot.org/uniprot/Q9XTB4 Q9XTB4]
 
−
** [http://www.uniprot.org/uniprot/P50917 P50917]
 
−
** [http://www.uniprot.org/uniprot/Q49981 Q49981]
 
−
** [http://www.uniprot.org/uniprot/Q9ZP05 Q9ZP05]
 
−
** [http://www.uniprot.org/uniprot/Q9ZP06 Q9ZP06]
 
−
** [http://www.uniprot.org/uniprot/Q9SN86 Q9SN86]
 
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
 
{{#set: common name=malate dehydrogenase, mitochondrial precursor}}
 
{{#set: common name=malate dehydrogenase, mitochondrial precursor}}
 
{{#set: ec number=EC-1.1.1.37}}
 
{{#set: ec number=EC-1.1.1.37}}
 
{{#set: common name=malate dehydrogenation}}
 
{{#set: common name=malate dehydrogenation}}
−
{{#set: gene associated=CHC_T00008733001|CHC_T00009350001_1|CHC_T00009173001_1|CHC_T00009292001_1|CHC_T00008733001_1|CHC_T00008600001_1}}
+
{{#set: gene associated=CHC_T00009292001_1|CHC_T00008733001_1|CHC_T00008600001_1|CHC_T00008733001|CHC_T00009350001_1|CHC_T00009173001_1}}
−
{{#set: in pathway=FERMENTATION-PWY|PWY-561|PWY-5913|PWY-1622|GLUCONEO-PWY|P42-PWY|PWY-5392|PWY-7383|P105-PWY|P23-PWY|PWY66-399|PWY-5690|GLYOXYLATE-BYPASS|PWY-6969|PWY-6728|PWY-7115|P108-PWY|MALATE-ASPARTATE-SHUTTLE-PWY|PWY66-398|TCA}}
+
{{#set: in pathway=PWY-7383|P108-PWY|FERMENTATION-PWY|PWY-5690|GLYOXYLATE-BYPASS|P105-PWY|PWY-5913|PWY-1622|PWY-7115|TCA|PWY-6728|P23-PWY|PWY-6969|PWY-5392|PWY66-398|PWY66-399|GLUCONEO-PWY|P42-PWY|MALATE-ASPARTATE-SHUTTLE-PWY|PWY-561}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
+
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 18:21, 9 January 2019

Reaction MALATE-DEH-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • malate dehydrogenase, mitochondrial precursor
  • ec number:
  • Synonym(s):
    • malate dehydrogenation

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (S)-malate[c] + 1 NAD+[c] <=> 1 H+[c] + 1 NADH[c] + 1 oxaloacetate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7383, anaerobic energy metabolism (invertebrates, cytosol): PWY-7383
    • 3 reactions found over 7 reactions in the full pathway
  • P108-PWY, pyruvate fermentation to propanoate I: P108-PWY
    • 2 reactions found over 7 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 11 reactions found over 16 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 9 reactions found over 9 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 4 reactions found over 6 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-1622, formaldehyde assimilation I (serine pathway): PWY-1622
    • 6 reactions found over 13 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
    • 7 reactions found over 9 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 9 reactions found over 19 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 8 reactions found over 12 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 6 reactions found over 12 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 11 reactions found over 11 reactions in the full pathway
  • PWY66-399, gluconeogenesis III: PWY66-399
    • 10 reactions found over 12 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • P42-PWY, incomplete reductive TCA cycle: P42-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • MALATE-ASPARTATE-SHUTTLE-PWY, L-aspartate degradation II: MALATE-ASPARTATE-SHUTTLE-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-561, superpathway of glyoxylate cycle and fatty acid degradation: PWY-561
    • 5 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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