Difference between revisions of "PWY-6348"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=XYLCAT-PWY XYLCAT-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TA...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R223-RXN R223-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** octanoyl-CoA ligase ** long-c...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=XYLCAT-PWY XYLCAT-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R223-RXN R223-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** xylose degradation I
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** octanoyl-CoA ligase
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** long-chain-fatty-acid-CoA ligase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** xylose catabolism
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''1''' reaction(s) found
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* With identifiers:
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** [[XYLULOKIN-RXN]]
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** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CPD-195]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[CPD-196]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* '''1''' reaction(s) not found
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** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 octanoate[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 octanoyl-CoA[c]
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** [http://metacyc.org/META/NEW-IMAGE?object=XYLISOM-RXN XYLISOM-RXN]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[CHC_T00009428001]]
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** ORIGINAL_GENOME
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***AUTOMATED-NAME-MATCH
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* [[CHC_T00009428001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[CHC_T00008811001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[CHC_T00008811001]]
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** ORIGINAL_GENOME
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***AUTOMATED-NAME-MATCH
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* [[CHC_T00008160001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[CHC_T00008500001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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== Pathways  ==
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* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[P221-PWY]], octane oxidation: [http://metacyc.org/META/NEW-IMAGE?object=P221-PWY P221-PWY]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[original_genome]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=XYLCAT-PWY XYLCAT-PWY]
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{{#set: common name=octanoyl-CoA ligase}}
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{{#set: taxonomic range=TAX-4751}}
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{{#set: common name=long-chain-fatty-acid-CoA ligase}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: common name=xylose degradation I}}
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{{#set: gene associated=CHC_T00009428001|CHC_T00009428001_1|CHC_T00008811001_1|CHC_T00008811001|CHC_T00008160001_1|CHC_T00008500001_1}}
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{{#set: common name=xylose catabolism}}
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{{#set: in pathway=PWY-6920|P221-PWY}}
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{{#set: reaction found=1}}
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{{#set: reconstruction category=orthology}}
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{{#set: reaction not found=1}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}

Revision as of 12:04, 18 January 2018

Reaction R223-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • octanoyl-CoA ligase
    • long-chain-fatty-acid-CoA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 ATP[c] + 1 octanoate[c] => 1 AMP[c] + 1 diphosphate[c] + 1 octanoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6920, 6-gingerol analog biosynthesis (engineered): PWY-6920
    • 3 reactions found over 6 reactions in the full pathway
  • P221-PWY, octane oxidation: P221-PWY
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-6348&oldid=6200"