Difference between revisions of "PWY-5723"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.13.1-RXN 3.1.13.1-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-5...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.13.1-RXN 3.1.13.1-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-58024]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/3.1.13.1 EC-3.1.13.1]
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** Rubisco shunt
 
* Synonym(s):
 
* Synonym(s):
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** Ribonuclease II
 
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''10''' reactions found over '''10''' reactions in the full pathway
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** 1 [[RNASE-II-DEGRADATION-SUBSTRATE-MRNA]][c] '''+''' n [[WATER]][c] '''=>''' n [[Nucleoside-Monophosphates]][c]
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* [[1TRANSKETO-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 RNase II degradation substrate mRNA[c] '''+''' n H2O[c] '''=>''' n a nucleoside 5'-monophosphate[c]
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*** [[CHC_T00009390001_1]]
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*** [[CHC_T00005040001_1]]
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== Genes associated with this reaction  ==
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** 3 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-arabidopsis_thaliana]]
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* [[CHC_T00003097001_1]]
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[orthology-galdieria.sulphuraria]]
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== Pathways  ==
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* [[2PGADEHYDRAT-RXN]]
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== Reconstruction information  ==
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** 5 associated gene(s):
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* [[orthology]]:
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*** [[CHC_T00008696001]]
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** [[pantograph]]:
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*** [[CHC_T00008696001_1]]
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*** [[galdieria.sulphuraria]]
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*** [[CHC_T00009127001_1]]
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*** [[CHC_T00008490001]]
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*** [[CHC_T00009127001]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-original_genome]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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*** [[orthology-galdieria.sulphuraria]]
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* [[2TRANSKETO-RXN]]
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** 2 associated gene(s):
 +
*** [[CHC_T00005040001_1]]
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*** [[CHC_T00009390001_1]]
 +
** 3 reconstruction source(s) associated:
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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*** [[orthology-galdieria.sulphuraria]]
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* [[3PGAREARR-RXN]]
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** 6 associated gene(s):
 +
*** [[CHC_T00001519001_1]]
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*** [[CHC_T00004490001_1]]
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*** [[CHC_T00004201001_1]]
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*** [[CHC_T00007707001_1]]
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*** [[CHC_T00000449001_1]]
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*** [[CHC_T00001241001_1]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
*** [[orthology-galdieria.sulphuraria]]
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* [[PEPDEPHOS-RXN]]
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** 6 associated gene(s):
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*** [[CHC_T00008530001]]
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*** [[CHC_T00008652001]]
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*** [[CHC_T00008652001_1]]
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*** [[CHC_T00008482001_1]]
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*** [[CHC_T00008482001]]
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*** [[CHC_T00008530001_1]]
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** 4 reconstruction source(s) associated:
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
*** [[orthology-galdieria.sulphuraria]]
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* [[PHOSPHORIBULOKINASE-RXN]]
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** 2 associated gene(s):
 +
*** [[CHC_T00008651001_1]]
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*** [[CHC_T00008651001]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
*** [[orthology-galdieria.sulphuraria]]
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* [[RIB5PISOM-RXN]]
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** 1 associated gene(s):
 +
*** [[CHC_T00009264001_1]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
*** [[orthology-galdieria.sulphuraria]]
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* [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]]
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** 3 associated gene(s):
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*** [[CHC_955]]
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*** [[CHC_950]]
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*** [[CHC_T00006620001_1]]
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** 3 reconstruction source(s) associated:
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
*** [[orthology-galdieria.sulphuraria]]
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* [[RIBULP3EPIM-RXN]]
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** 3 associated gene(s):
 +
*** [[CHC_T00008270001]]
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*** [[CHC_T00008270001_1]]
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*** [[CHC_T00006121001_1]]
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** 4 reconstruction source(s) associated:
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
*** [[orthology-galdieria.sulphuraria]]
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* [[TRANSALDOL-RXN]]
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** 1 associated gene(s):
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*** [[CHC_T00000120001_1]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
*** [[orthology-galdieria.sulphuraria]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* UNIPROT:
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{{#set: taxonomic range=TAX-58024}}
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** [http://www.uniprot.org/uniprot/P30850 P30850]
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{{#set: common name=Rubisco shunt}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=10}}
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{{#set: ec number=EC-3.1.13.1}}
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{{#set: total reaction=10}}
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{{#set: common name=Ribonuclease II}}
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{{#set: completion rate=100.0}}
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{{#set: gene associated=CHC_T00003097001_1}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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Revision as of 15:10, 23 May 2018

Pathway PWY-5723

  • taxonomic range:
  • common name:
    • Rubisco shunt
  • Synonym(s):

Reaction(s) found

10 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-5723&oldid=13501"