Difference between revisions of "CHC T00008988001"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl phosphate synthas...")
(Created page with "Category:Gene == Gene CHC_T00008988001 == * left end position: ** 30202 * transcription direction: ** NEGATIVE * right end position: ** 32811 * centisome position: ** 29.7...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] ==
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== Gene CHC_T00008988001 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 30202
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* common name:
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* transcription direction:
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** carbamoyl phosphate synthase small subunit
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/6.3.4.16 EC-6.3.4.16]
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** 32811
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* centisome position:
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** 29.744238   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GLYCOPHOSPHORYL-RXN]]
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** 1 [[HCO3]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 2 [[ATP]][c] '''=>''' 1 [[CARBAMOYL-P]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[ADP]][c]
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** Source: [[annotation-original_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 hydrogencarbonate[c] '''+''' 1 ammonium[c] '''+''' 2 ATP[c] '''=>''' 1 carbamoyl phosphate[c] '''+''' 2 H+[c] '''+''' 1 phosphate[c] '''+''' 2 ADP[c]
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* Reaction: [[GLYMALTOPHOSPHORYL-RXN]]
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** Source: [[annotation-original_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12171]]
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* [[CHC_70]]
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** Source: [[annotation-original_genome]]
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** ORIGINAL_GENOME
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*** Assignment: automated-name-match
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***AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-12392]]
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* [[CHC_T00010056001_1]]
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** Source: [[annotation-original_genome]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** Assignment: automated-name-match
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* [[CHC_T00008596001_1]]
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* Reaction: [[RXN-14284]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** Source: [[annotation-original_genome]]
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== Pathways  ==
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*** Assignment: automated-name-match
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* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
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* Reaction: [[RXN-14285]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** Source: [[annotation-original_genome]]
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== Reconstruction information  ==
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*** Assignment: automated-name-match
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* [[orthology]]:
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* Reaction: [[RXN-14286]]
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** [[pantograph]]:
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** Source: [[annotation-original_genome]]
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*** [[galdieria.sulphuraria]]
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*** Assignment: automated-name-match
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* [[annotation]]:
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* Reaction: [[RXN-14353]]
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** [[pathwaytools]]:
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** Source: [[annotation-original_genome]]
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*** [[original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-1826]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9025]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN0-5182]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN0-5184]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-6731]]
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* [[PWY-7238]]
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* [[PWY-6737]]
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* [[PWY-5941]]
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* [[GLYCOCAT-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=30202}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10624 10624]
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18030 18030]
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{{#set: right end position=32811}}
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* LIGAND-RXN:
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{{#set: centisome position=29.744238    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00149 R00149]
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{{#set: reaction associated=GLYCOPHOSPHORYL-RXN|GLYMALTOPHOSPHORYL-RXN|RXN-12171|RXN-12392|RXN-14284|RXN-14285|RXN-14286|RXN-14353|RXN-1826|RXN-9025|RXN0-5182|RXN0-5184}}
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* UNIPROT:
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{{#set: pathway associated=PWY-6731|PWY-7238|PWY-6737|PWY-5941|GLYCOCAT-PWY}}
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** [http://www.uniprot.org/uniprot/O15829 O15829]
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** [http://www.uniprot.org/uniprot/O15830 O15830]
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** [http://www.uniprot.org/uniprot/P07756 P07756]
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** [http://www.uniprot.org/uniprot/P31327 P31327]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=carbamoyl phosphate synthase small subunit}}
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{{#set: ec number=EC-6.3.4.16}}
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{{#set: gene associated=CHC_70|CHC_T00010056001_1|CHC_T00008596001_1}}
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{{#set: in pathway=PWY-4984}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Revision as of 15:13, 23 May 2018

Gene CHC_T00008988001

  • left end position:
    • 30202
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 32811
  • centisome position:
    • 29.744238
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CHC_T00008988001&oldid=13707"