Difference between revisions of "RXN-17127"

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(Created page with "Category:Gene == Gene CHC_T00008758001 == * left end position: ** 271036 * transcription direction: ** POSITIVE * right end position: ** 273234 * centisome position: ** 51...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: **...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene CHC_T00008758001 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] ==
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* left end position:
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* direction:
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** 271036
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** LEFT-TO-RIGHT
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* transcription direction:
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* ec number:
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** POSITIVE
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** [http://enzyme.expasy.org/EC/6.1.1.14 EC-6.1.1.14]
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* right end position:
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−
** 273234
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* centisome position:
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** 51.20766   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[DXS-RXN]]
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* With identifiers:
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** original_genome
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** 1 [[GLY]][c] '''+''' 1 [[GLY-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-GLY-tRNAs]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 glycine[c] '''+''' 1 a tRNAgly[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 a glycyl-[tRNAgly][c]
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* [[NONMEVIPP-PWY]]
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* [[PYRIDOXSYN-PWY]]
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== Genes associated with this reaction  ==
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* [[PWY-6891]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY-6892]]
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* [[CHC_T00007645001_1]]
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* [[PWY-7560]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[CHC_T00004794001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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== Pathways ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
 +
** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[original_genome]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=271036}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16013 16013]
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{{#set: right end position=273234}}
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* LIGAND-RXN:
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{{#set: centisome position=51.20766    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03654 R03654]
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{{#set: reaction associated=DXS-RXN}}
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* UNIPROT:
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{{#set: pathway associated=NONMEVIPP-PWY|PYRIDOXSYN-PWY|PWY-6891|PWY-6892|PWY-7560}}
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** [http://www.uniprot.org/uniprot/P41250 P41250]
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** [http://www.uniprot.org/uniprot/P54380 P54380]
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** [http://www.uniprot.org/uniprot/Q9ZCB1 Q9ZCB1]
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** [http://www.uniprot.org/uniprot/P43822 P43822]
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** [http://www.uniprot.org/uniprot/P54381 P54381]
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** [http://www.uniprot.org/uniprot/O51344 O51344]
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** [http://www.uniprot.org/uniprot/Q46371 Q46371]
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** [http://www.uniprot.org/uniprot/Q9ZCB0 Q9ZCB0]
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** [http://www.uniprot.org/uniprot/Q9WY59 Q9WY59]
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** [http://www.uniprot.org/uniprot/P43821 P43821]
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** [http://www.uniprot.org/uniprot/O83678 O83678]
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** [http://www.uniprot.org/uniprot/Q9WY60 Q9WY60]
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** [http://www.uniprot.org/uniprot/Q9PPK3 Q9PPK3]
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** [http://www.uniprot.org/uniprot/P56454 P56454]
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** [http://www.uniprot.org/uniprot/Q9PN63 Q9PN63]
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** [http://www.uniprot.org/uniprot/Q57681 Q57681]
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** [http://www.uniprot.org/uniprot/P67029 P67029]
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** [http://www.uniprot.org/uniprot/O67081 O67081]
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** [http://www.uniprot.org/uniprot/O67898 O67898]
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** [http://www.uniprot.org/uniprot/O59235 O59235]
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** [http://www.uniprot.org/uniprot/P47493 P47493]
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** [http://www.uniprot.org/uniprot/Q9ZKP1 Q9ZKP1]
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** [http://www.uniprot.org/uniprot/Q9JW67 Q9JW67]
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** [http://www.uniprot.org/uniprot/P56453 P56453]
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** [http://www.uniprot.org/uniprot/O27874 O27874]
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** [http://www.uniprot.org/uniprot/Q9ZKM9 Q9ZKM9]
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** [http://www.uniprot.org/uniprot/Q9CGK0 Q9CGK0]
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** [http://www.uniprot.org/uniprot/P38088 P38088]
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** [http://www.uniprot.org/uniprot/Q06817 Q06817]
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** [http://www.uniprot.org/uniprot/Q51114 Q51114]
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** [http://www.uniprot.org/uniprot/P75425 P75425]
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** [http://www.uniprot.org/uniprot/Q55716 Q55716]
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** [http://www.uniprot.org/uniprot/P00960 P00960]
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** [http://www.uniprot.org/uniprot/P00961 P00961]
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** [http://www.uniprot.org/uniprot/Q8L785 Q8L785]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-6.1.1.14}}
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{{#set: gene associated=CHC_T00007645001_1|CHC_T00004794001_1}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}

Revision as of 10:50, 18 January 2018

Reaction GLYCINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 glycine[c] + 1 a tRNAgly[c] + 1 ATP[c] => 1 diphosphate[c] + 1 AMP[c] + 1 a glycyl-[tRNAgly][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-17127&oldid=5020"