Difference between revisions of "CYSTEINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOHEMEFERROCHELAT-RXN PROTOHEMEFERROCHELAT-RXN] == * direction: ** REVERSIBLE * common name: **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOHEMEFERROCHELAT-RXN PROTOHEMEFERROCHELAT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ferrochelatase
+
** Cysteinyl-tRNA Synthetase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.99.1.1 EC-4.99.1.1]
+
** [http://enzyme.expasy.org/EC/6.1.1.16 EC-6.1.1.16]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTOHEME]][c] '''+''' 2 [[PROTON]][c] '''<=>''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 1 [[FE+2]][c]
+
** 1 [[CYS-tRNAs]][c] '''+''' 1 [[CYS]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-CYS-tRNAs]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ferroheme b[c] '''+''' 2 H+[c] '''<=>''' 1 protoporphyrin IX[c] '''+''' 1 Fe2+[c]
+
** 1 a tRNAcys[c] '''+''' 1 L-cysteine[c] '''+''' 1 ATP[c] '''=>''' 1 an L-cysteinyl-[tRNAcys][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008918001]]
+
* Gene: [[CHC_T00002892001_1]]
−
** ORIGINAL_GENOME
+
** Source: [[orthology-galdieria.sulphuraria]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00008918001_1]]
+
* Gene: [[CHC_T00009398001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
** [[pantograph]]-[[a.taliana]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00009398001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
*** [[a.taliana]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[annotation]]:
+
*** Tool: [[pantograph]]
−
** [[pathwaytools]]:
+
* Category: [[annotation]]
−
*** [[original_genome]]
+
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22584 22584]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00310 R00310]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03650 R03650]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P22830 P22830]
+
** [http://www.uniprot.org/uniprot/Q9PPB8 Q9PPB8]
−
** [http://www.uniprot.org/uniprot/P22315 P22315]
+
** [http://www.uniprot.org/uniprot/Q06752 Q06752]
−
** [http://www.uniprot.org/uniprot/P28602 P28602]
+
** [http://www.uniprot.org/uniprot/P43816 P43816]
−
** [http://www.uniprot.org/uniprot/Q05338 Q05338]
+
** [http://www.uniprot.org/uniprot/O29836 O29836]
−
** [http://www.uniprot.org/uniprot/P42043 P42043]
+
** [http://www.uniprot.org/uniprot/Q9CEJ0 Q9CEJ0]
−
** [http://www.uniprot.org/uniprot/P23871 P23871]
+
** [http://www.uniprot.org/uniprot/O58370 O58370]
−
** [http://www.uniprot.org/uniprot/P32396 P32396]
+
** [http://www.uniprot.org/uniprot/O83129 O83129]
−
** [http://www.uniprot.org/uniprot/Q9CFB4 Q9CFB4]
+
** [http://www.uniprot.org/uniprot/Q9ZE62 Q9ZE62]
−
** [http://www.uniprot.org/uniprot/P56107 P56107]
+
** [http://www.uniprot.org/uniprot/Q9ZKW6 Q9ZKW6]
−
** [http://www.uniprot.org/uniprot/O67083 O67083]
+
** [http://www.uniprot.org/uniprot/Q9WZH8 Q9WZH8]
−
** [http://www.uniprot.org/uniprot/Q9PI08 Q9PI08]
+
** [http://www.uniprot.org/uniprot/P41259 P41259]
−
** [http://www.uniprot.org/uniprot/Q9JVA5 Q9JVA5]
+
** [http://www.uniprot.org/uniprot/O51545 O51545]
−
** [http://www.uniprot.org/uniprot/P22600 P22600]
+
** [http://www.uniprot.org/uniprot/Q9Z6X4 Q9Z6X4]
−
** [http://www.uniprot.org/uniprot/P43868 P43868]
+
** [http://www.uniprot.org/uniprot/O67163 O67163]
−
** [http://www.uniprot.org/uniprot/P16622 P16622]
+
** [http://www.uniprot.org/uniprot/Q9JWJ3 Q9JWJ3]
−
** [http://www.uniprot.org/uniprot/Q59735 Q59735]
+
** [http://www.uniprot.org/uniprot/P47495 P47495]
−
** [http://www.uniprot.org/uniprot/P43413 P43413]
+
** [http://www.uniprot.org/uniprot/P75423 P75423]
−
** [http://www.uniprot.org/uniprot/P54225 P54225]
+
** [http://www.uniprot.org/uniprot/P74330 P74330]
−
** [http://www.uniprot.org/uniprot/P42045 P42045]
+
** [http://www.uniprot.org/uniprot/Q9UWP2 Q9UWP2]
−
** [http://www.uniprot.org/uniprot/O64391 O64391]
+
** [http://www.uniprot.org/uniprot/P21888 P21888]
−
** [http://www.uniprot.org/uniprot/P42044 P42044]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: common name=Cysteinyl-tRNA Synthetase}}
−
{{#set: common name=ferrochelatase}}
+
{{#set: ec number=EC-6.1.1.16}}
−
{{#set: ec number=EC-4.99.1.1}}
+
{{#set: gene associated=CHC_T00002892001_1|CHC_T00009398001_1|CHC_T00009398001}}
−
{{#set: gene associated=CHC_T00008918001|CHC_T00008918001_1}}
+
{{#set: in pathway=TRNA-CHARGING-PWY}}
−
{{#set: in pathway=PWY0-1415|HEMESYN2-PWY|HEME-BIOSYNTHESIS-II}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=annotation-original_genome|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Revision as of 15:21, 23 May 2018

Reaction CYSTEINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Cysteinyl-tRNA Synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNAcys[c] + 1 L-cysteine[c] + 1 ATP[c] => 1 an L-cysteinyl-[tRNAcys][c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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