Difference between revisions of "CHC T00007882001 1"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11269 RXN-11269] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enz...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11269 RXN-11269] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.5.1.9 EC-2.5.1.9]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-674]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-12218]][c]
+
** 1 [[PROTON]][c] '''+''' 2 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''=>''' 1 [[RIBOFLAVIN]][c] '''+''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 trans-cinnamate[c] '''+''' 1 H2O[c] '''=>''' 1 3-hydroxy-3-phenylpropanoate[c]
+
** 1 H+[c] '''+''' 2 6,7-dimethyl-8-(1-D-ribityl)lumazine[c] '''=>''' 1 riboflavin[c] '''+''' 1 5-amino-6-(D-ribitylamino)uracil[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[CHC_T00004285001_1]]
 +
** [[pantograph]]-[[galdieria.sulphuraria]]
 +
** [[pantograph]]-[[a.taliana]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6444]], benzoate biosynthesis II (CoA-independent, non-β-oxidative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6444 PWY-6444]
+
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* [[orthology]]:
−
** [[meneco]]:
+
** [[pantograph]]:
−
*** [[added for gapfilling]]
+
*** [[galdieria.sulphuraria]]
 +
*** [[a.taliana]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20772 20772]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P11998 P11998]
 +
** [http://www.uniprot.org/uniprot/P16440 P16440]
 +
** [http://www.uniprot.org/uniprot/Q9JUA6 Q9JUA6]
 +
** [http://www.uniprot.org/uniprot/O24854 O24854]
 +
** [http://www.uniprot.org/uniprot/O26237 O26237]
 +
** [http://www.uniprot.org/uniprot/P66037 P66037]
 +
** [http://www.uniprot.org/uniprot/Q9CGU8 Q9CGU8]
 +
** [http://www.uniprot.org/uniprot/Q9YDC5 Q9YDC5]
 +
** [http://www.uniprot.org/uniprot/Q9PN77 Q9PN77]
 +
** [http://www.uniprot.org/uniprot/Q9CGU6 Q9CGU6]
 +
** [http://www.uniprot.org/uniprot/P45273 P45273]
 +
** [http://www.uniprot.org/uniprot/Q9PIB9 Q9PIB9]
 +
** [http://www.uniprot.org/uniprot/O66529 O66529]
 +
** [http://www.uniprot.org/uniprot/Q58584 Q58584]
 +
** [http://www.uniprot.org/uniprot/O28856 O28856]
 +
** [http://www.uniprot.org/uniprot/Q01994 Q01994]
 +
** [http://www.uniprot.org/uniprot/P61714 P61714]
 +
** [http://www.uniprot.org/uniprot/P0AFU8 P0AFU8]
 +
** [http://www.uniprot.org/uniprot/P38145 P38145]
 +
** [http://www.uniprot.org/uniprot/Q55532 Q55532]
 +
** [http://www.uniprot.org/uniprot/P73527 P73527]
 +
** [http://www.uniprot.org/uniprot/Q44680 Q44680]
 +
** [http://www.uniprot.org/uniprot/Q44681 Q44681]
 +
** [http://www.uniprot.org/uniprot/P50854 P50854]
 +
** [http://www.uniprot.org/uniprot/P50856 P50856]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=PWY-6444}}
+
{{#set: ec number=EC-2.5.1.9}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: gene associated=CHC_T00004285001_1}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: in pathway=PWY-6167|PWY-6168|RIBOSYN2-PWY}}
−
{{#set: reconstruction source=added for gapfilling}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}

Revision as of 10:51, 18 January 2018

Reaction RIBOFLAVIN-SYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6167, flavin biosynthesis II (archaea): PWY-6167
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CHC_T00007882001_1&oldid=5068"