Difference between revisions of "PWY-5109"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11520 RXN-11520] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5109 PWY-5109] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11520 RXN-11520] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5109 PWY-5109] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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* common name:
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** 2-methylbutanoate biosynthesis
 
* Synonym(s):
 
* Synonym(s):
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** 2-methylbutyrate biosynthesis
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''2''' reactions found over '''6''' reactions in the full pathway
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[1-7-DIMETHYLXANTHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[CPD-12483]][c]
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* [[METHYLACETOACETYLCOATHIOL-RXN]]
* With common name(s):
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** 3 associated gene(s):
** 1 oxygen[c] '''+''' 1 paraxanthine[c] '''+''' 1 H2O[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 1,7-dimethylurate[c]
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*** [[CHC_T00009349001_1]]
 
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*** [[CHC_T00008981001]]
== Genes associated with this reaction  ==
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*** [[CHC_T00008981001_1]]
Genes have been associated with this reaction based on different elements listed below.
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** 3 reconstruction source(s) associated:
* [[CHC_T00000194001_1]]
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*** [[annotation-original_genome]]
** [[pantograph]]-[[a.taliana]]
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*** [[orthology-ectocarpus_siliculosus]]
* [[CHC_T00006932001_1]]
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*** [[orthology-galdieria.sulphuraria]]
** [[pantograph]]-[[a.taliana]]
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* [[TIGLYLCOA-HYDROXY-RXN]]
* [[CHC_T00006216001_1]]
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** 5 associated gene(s):
** [[pantograph]]-[[a.taliana]]
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*** [[CHC_T00008882001_1]]
== Pathways  ==
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*** [[CHC_T00009422001_1]]
* [[PWY-6632]], caffeine degradation IV (bacteria, via demethylation and oxidation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6632 PWY-6632]
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*** [[CHC_T00009190001_1]]
** '''4''' reactions found over '''5''' reactions in the full pathway
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*** [[CHC_T00009349001_1]]
== Reconstruction information  ==
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*** [[CHC_T00009110001_1]]
* [[orthology]]:
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** 3 reconstruction source(s) associated:
** [[pantograph]]:
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*** [[orthology-arabidopsis_thaliana]]
*** [[a.taliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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*** [[orthology-galdieria.sulphuraria]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.178-RXN 1.1.1.178-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2-METHYLACYL-COA-DEHYDROGENASE-RXN 2-METHYLACYL-COA-DEHYDROGENASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PROPIONATE-COA-TRANSFERASE-RXN PROPIONATE-COA-TRANSFERASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15031 RXN-15031]
 
== External links  ==
 
== External links  ==
* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33208}}
** [http://www.genome.jp/dbget-bin/www_bget?R07977 R07977]
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{{#set: common name=2-methylbutanoate biosynthesis}}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=2-methylbutyrate biosynthesis}}
{{#set: gene associated=CHC_T00000194001_1|CHC_T00006932001_1|CHC_T00006216001_1}}
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{{#set: reaction found=2}}
{{#set: in pathway=PWY-6632}}
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{{#set: total reaction=6}}
{{#set: reconstruction category=orthology}}
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{{#set: completion rate=33.0}}
{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=a.taliana}}
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Revision as of 16:41, 23 May 2018

Pathway PWY-5109

  • taxonomic range:
  • common name:
    • 2-methylbutanoate biosynthesis
  • Synonym(s):
    • 2-methylbutyrate biosynthesis

Reaction(s) found

2 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links