Difference between revisions of "RXN-11911"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BTUR2-RXN BTUR2-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11911 RXN-11911] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BTUR2-RXN BTUR2-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11911 RXN-11911] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.17 EC-2.5.1.17]
+
** [http://enzyme.expasy.org/EC/1.14.13 EC-1.14.13]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[COBINAMIDE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[P3I]][c] '''+''' 1 [[ADENOSYLCOBINAMIDE]][c]
+
** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-12568]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-8847]][c] '''+''' 1 [[NADP]][c] '''+''' 2 [[WATER]][c] '''+''' 1 [[CPD-8844]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 cobinamide[c] '''+''' 1 ATP[c] '''=>''' 1 PPPi[c] '''+''' 1 adenosylcobinamide[c]
+
** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 (3S,6E)-nerolidol[c] '''+''' 1 oxygen[c] '''=>''' 1 but-1-en-3-one[c] '''+''' 1 NADP+[c] '''+''' 2 H2O[c] '''+''' 1 (3E)-4,8-dimethylnona-1,3,7-triene[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[CHC_T00002690001_1]]
 
−
** [[pantograph]]-[[galdieria.sulphuraria]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[COBALSYN-PWY]], adenosylcobalamin salvage from cobinamide I: [http://metacyc.org/META/NEW-IMAGE?object=COBALSYN-PWY COBALSYN-PWY]
+
* [[PWY-5434]], (3E)-4,8-dimethylnona-1,3,7-triene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5434 PWY-5434]
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6269]], adenosylcobalamin salvage from cobinamide II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6269 PWY-6269]
+
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14725 14725]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R07268 R07268]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.5.1.17}}
+
{{#set: ec number=EC-1.14.13}}
−
{{#set: gene associated=CHC_T00002690001_1}}
+
{{#set: in pathway=PWY-5434}}
−
{{#set: in pathway=COBALSYN-PWY|PWY-6269}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 16:49, 23 May 2018

Reaction RXN-11911

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NADPH[c] + 1 H+[c] + 1 (3S,6E)-nerolidol[c] + 1 oxygen[c] => 1 but-1-en-3-one[c] + 1 NADP+[c] + 2 H2O[c] + 1 (3E)-4,8-dimethylnona-1,3,7-triene[c]

Genes associated with this reaction

Pathways

  • PWY-5434, (3E)-4,8-dimethylnona-1,3,7-triene biosynthesis: PWY-5434
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-11911&oldid=15421"