Difference between revisions of "2.7.9.3-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** indole-3-glycerol phospha...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.9.3-RXN 2.7.9.3-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.9.3-RXN 2.7.9.3-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** indole-3-glycerol phosphate synthase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1.48 EC-4.1.1.48]
+
** [http://enzyme.expasy.org/EC/2.7.9.3 EC-2.7.9.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[SE-2]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[SEPO3]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate[c] '''=>''' 1 CO2[c] '''+''' 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''+''' 1 H2O[c]
+
** 1 ATP[c] '''+''' 1 H2O[c] '''+''' 1 selenide[c] '''=>''' 1 phosphate[c] '''+''' 1 selenophosphate[c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008561001]]
+
* Gene: [[CHC_T00005216001_1]]
−
** ORIGINAL_GENOME
+
** Source: [[orthology-galdieria.sulphuraria]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00008561001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
** [[pantograph]]-[[a.taliana]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
+
* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
*** [[a.taliana]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[annotation]]:
+
*** Tool: [[pantograph]]
−
** [[pathwaytools]]:
+
−
*** [[original_genome]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23476 23476]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18737 18737]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03595 R03595]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P42393 P42393]
+
** [http://www.uniprot.org/uniprot/Q9PMF9 Q9PMF9]
−
** [http://www.uniprot.org/uniprot/P20577 P20577]
+
−
** [http://www.uniprot.org/uniprot/P18304 P18304]
+
−
** [http://www.uniprot.org/uniprot/Q06121 Q06121]
+
−
** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
+
−
** [http://www.uniprot.org/uniprot/P20578 P20578]
+
−
** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
+
−
** [http://www.uniprot.org/uniprot/Q58328 Q58328]
+
−
** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
+
−
** [http://www.uniprot.org/uniprot/P03964 P03964]
+
−
** [http://www.uniprot.org/uniprot/P00910 P00910]
+
−
** [http://www.uniprot.org/uniprot/P00909 P00909]
+
−
** [http://www.uniprot.org/uniprot/P00911 P00911]
+
−
** [http://www.uniprot.org/uniprot/P17217 P17217]
+
−
** [http://www.uniprot.org/uniprot/P20409 P20409]
+
−
** [http://www.uniprot.org/uniprot/P00937 P00937]
+
−
** [http://www.uniprot.org/uniprot/P00908 P00908]
+
−
** [http://www.uniprot.org/uniprot/P05328 P05328]
+
−
** [http://www.uniprot.org/uniprot/P06531 P06531]
+
−
** [http://www.uniprot.org/uniprot/P18483 P18483]
+
−
** [http://www.uniprot.org/uniprot/P25170 P25170]
+
−
** [http://www.uniprot.org/uniprot/P26938 P26938]
+
−
** [http://www.uniprot.org/uniprot/P24773 P24773]
+
−
** [http://www.uniprot.org/uniprot/Q01999 Q01999]
+
−
** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
+
−
** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
+
−
** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
+
−
** [http://www.uniprot.org/uniprot/Q92370 Q92370]
+
−
** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
+
−
** [http://www.uniprot.org/uniprot/P94327 P94327]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=indole-3-glycerol phosphate synthase}}
+
{{#set: ec number=EC-2.7.9.3}}
−
{{#set: ec number=EC-4.1.1.48}}
+
{{#set: gene associated=CHC_T00005216001_1}}
−
{{#set: gene associated=CHC_T00008561001|CHC_T00008561001_1}}
+
{{#set: in pathway=PWY0-901|PWY-6281}}
−
{{#set: in pathway=TRPSYN-PWY}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=original_genome}}
 

Revision as of 16:03, 23 May 2018

Reaction 2.7.9.3-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 H2O[c] + 1 selenide[c] => 1 phosphate[c] + 1 selenophosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-901, L-selenocysteine biosynthesis I (bacteria): PWY0-901
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links




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