Difference between revisions of "CHC T00008662001"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-ISOPROPYLMALATESYN-RXN 2-ISOPROPYLMALATESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
(Created page with "Category:Gene == Gene CHC_T00008662001 == * left end position: ** 43667 * transcription direction: ** NEGATIVE * right end position: ** 45931 * centisome position: ** 29.0...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-ISOPROPYLMALATESYN-RXN 2-ISOPROPYLMALATESYN-RXN] ==
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== Gene CHC_T00008662001 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 43667
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* common name:
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* transcription direction:
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** 2-isopropylmalate synthase
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.3.3.13 EC-2.3.3.13]
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** 45931
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* centisome position:
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** 29.06251   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GLYCOGEN-BRANCH-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[ACETYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c] '''+''' 1 [[PROTON]][c]
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** Source: [[annotation-original_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 H2O[c] '''+''' 1 3-methyl-2-oxobutanoate[c] '''+''' 1 acetyl-CoA[c] '''=>''' 1 coenzyme A[c] '''+''' 1 (2S)-2-isopropylmalate[c] '''+''' 1 H+[c]
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* Reaction: [[RXN-14371]]
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** Source: [[annotation-original_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-14372]]
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* [[CHC_T00009551001]]
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** Source: [[annotation-original_genome]]
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** ORIGINAL_GENOME
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*** Assignment: automated-name-match
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***AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-7669]]
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* [[CHC_T00009551001_1]]
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** Source: [[annotation-original_genome]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** Assignment: automated-name-match
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** [[pantograph]]-[[a.taliana]]
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* Reaction: [[RXN-7710]]
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* [[CHC_T00008989001_1]]
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** Source: [[annotation-original_genome]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** Assignment: automated-name-match
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* [[CHC_T00008989001]]
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== Pathways associated ==
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** ORIGINAL_GENOME
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* [[GLYCOGENSYNTH-PWY]]
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***AUTOMATED-NAME-MATCH
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* [[PWY-622]]
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== Pathways  ==
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* [[PWY-5067]]
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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*** [[a.taliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[original_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=43667}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21524 21524]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=45931}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01213 R01213]
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{{#set: centisome position=29.06251    }}
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* UNIPROT:
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{{#set: reaction associated=GLYCOGEN-BRANCH-RXN|RXN-14371|RXN-14372|RXN-7669|RXN-7710}}
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** [http://www.uniprot.org/uniprot/P06208 P06208]
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{{#set: pathway associated=GLYCOGENSYNTH-PWY|PWY-622|PWY-5067}}
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** [http://www.uniprot.org/uniprot/Q58595 Q58595]
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** [http://www.uniprot.org/uniprot/P09151 P09151]
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** [http://www.uniprot.org/uniprot/Q9PLV9 Q9PLV9]
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** [http://www.uniprot.org/uniprot/Q9JUK6 Q9JUK6]
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** [http://www.uniprot.org/uniprot/Q58787 Q58787]
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** [http://www.uniprot.org/uniprot/P94565 P94565]
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** [http://www.uniprot.org/uniprot/Q9JP75 Q9JP75]
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** [http://www.uniprot.org/uniprot/Q02141 Q02141]
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** [http://www.uniprot.org/uniprot/P48575 P48575]
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** [http://www.uniprot.org/uniprot/O86511 O86511]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=2-isopropylmalate synthase}}
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{{#set: ec number=EC-2.3.3.13}}
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{{#set: gene associated=CHC_T00009551001|CHC_T00009551001_1|CHC_T00008989001_1|CHC_T00008989001}}
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Revision as of 16:13, 23 May 2018

Gene CHC_T00008662001

  • left end position:
    • 43667
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 45931
  • centisome position:
    • 29.06251
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CHC_T00008662001&oldid=16522"