Difference between revisions of "RXN-10441"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17113 RXN-17113] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-CoA oxidase * ec numbe...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10441 RXN-10441] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17113 RXN-17113] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10441 RXN-10441] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** acyl-CoA oxidase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
+
** [http://enzyme.expasy.org/EC/4.2.3.144 EC-4.2.3.144]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD-18491]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[CPD-18492]][c]
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** 1 [[WATER]][c] '''+''' 1 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-8848]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 oxygen[c] '''+''' 1 (6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 (2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA[c]
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** 1 H2O[c] '''+''' 1 geranylgeranyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 (E,E)-geranyllinalool[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[CHC_T00008935001]]
 
−
** ORIGINAL_GENOME
 
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***AUTOMATED-NAME-MATCH
 
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* [[CHC_T00009142001]]
 
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** ORIGINAL_GENOME
 
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***AUTOMATED-NAME-MATCH
 
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* [[CHC_T00009531001_1]]
 
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** [[pantograph]]-[[galdieria.sulphuraria]]
 
−
* [[CHC_T00007910001_1]]
 
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** [[pantograph]]-[[galdieria.sulphuraria]]
 
−
* [[CHC_T00008935001_1]]
 
−
** [[pantograph]]-[[galdieria.sulphuraria]]
 
−
* [[CHC_T00008400001]]
 
−
** ORIGINAL_GENOME
 
−
***AUTOMATED-NAME-MATCH
 
−
* [[CHC_T00008400001_1]]
 
−
** [[pantograph]]-[[galdieria.sulphuraria]]
 
−
* [[CHC_T00009531001]]
 
−
** ORIGINAL_GENOME
 
−
***AUTOMATED-NAME-MATCH
 
−
* [[CHC_T00008478001_1]]
 
−
** [[pantograph]]-[[galdieria.sulphuraria]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7726]], (4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis (6-desaturase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7726 PWY-7726]
+
* [[PWY-6668]], (E,E)-4,8,12-trimethyltrideca-1,3,7,11-tetraene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6668 PWY-6668]
−
** '''3''' reactions found over '''13''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[galdieria.sulphuraria]]
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*** Tool: [[meneco]]
−
* [[annotation]]:
+
**** Comment: [[added for gapfilling]]
−
** [[pathwaytools]]:
+
−
*** [[original_genome]]
+
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=acyl-CoA oxidase}}
+
{{#set: ec number=EC-4.2.3.144}}
−
{{#set: ec number=EC-1.3.3.6}}
+
{{#set: in pathway=PWY-6668}}
−
{{#set: gene associated=CHC_T00008935001|CHC_T00009142001|CHC_T00009531001_1|CHC_T00007910001_1|CHC_T00008935001_1|CHC_T00008400001|CHC_T00008400001_1|CHC_T00009531001|CHC_T00008478001_1}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: in pathway=PWY-7726}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Latest revision as of 16:36, 23 May 2018

Reaction RXN-10441

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 geranylgeranyl diphosphate[c] => 1 diphosphate[c] + 1 (E,E)-geranyllinalool[c]

Genes associated with this reaction

Pathways

  • PWY-6668, (E,E)-4,8,12-trimethyltrideca-1,3,7,11-tetraene biosynthesis: PWY-6668
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-10441&oldid=17593"