Difference between revisions of "PWY-6435"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIG...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** serine palmitoyltransferase, LCB1 subunit
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** 4-hydroxybenzoate biosynthesis V
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** serine palmitoyltransferase, LCB2 subunit
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.50 EC-2.3.1.50]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''5''' reactions in the full pathway
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** 1 [[SER]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PALMITYL-COA]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c] '''+''' 1 [[CO-A]][c]
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* [[4-COUMARATE--COA-LIGASE-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 L-serine[c] '''+''' 1 H+[c] '''+''' 1 palmitoyl-CoA[c] '''=>''' 1 CO2[c] '''+''' 1 3-dehydrosphinganine[c] '''+''' 1 coenzyme A[c]
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*** [[CHC_T00008160001_1]]
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*** [[CHC_T00008472001_1]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-arabidopsis_thaliana]]
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* [[CHC_T00008326001]]
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*** [[orthology-ectocarpus_siliculosus]]
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** ORIGINAL_GENOME
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* [[RXN-11244]]
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***AUTOMATED-NAME-MATCH
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** 4 associated gene(s):
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* [[CHC_T00008326001_1]]
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*** [[CHC_T00009190001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00009349001_1]]
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* [[CHC_T00008697001]]
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*** [[CHC_T00009110001_1]]
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** ORIGINAL_GENOME
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*** [[CHC_T00009422001_1]]
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***AUTOMATED-NAME-MATCH
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** 2 reconstruction source(s) associated:
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* [[CHC_T00008697001_1]]
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[orthology-galdieria.sulphuraria]]
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** [[pantograph]]-[[a.taliana]]
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* [[RXN-11245]]
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== Pathways  ==
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** 3 associated gene(s):
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* [[PWY-5129]], sphingolipid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129]
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*** [[CHC_T00009349001_1]]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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*** [[CHC_T00009422001_1]]
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* [[PWY3DJ-12]], ceramide de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-12 PWY3DJ-12]
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*** [[CHC_T00008557001_1]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOLIPID-SYN-PWY SPHINGOLIPID-SYN-PWY]
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*** [[orthology-galdieria.sulphuraria]]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[RXN-11246]]
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== Reconstruction information  ==
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** 2 associated gene(s):
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* [[orthology]]:
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*** [[CHC_T00009349001_1]]
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** [[pantograph]]:
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*** [[CHC_T00009422001_1]]
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*** [[galdieria.sulphuraria]]
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** 1 reconstruction source(s) associated:
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*** [[a.taliana]]
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*** [[orthology-galdieria.sulphuraria]]
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* [[annotation]]:
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== Reaction(s) not found ==
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** [[pathwaytools]]:
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* [http://metacyc.org/META/NEW-IMAGE?object=3.1.2.23-RXN 3.1.2.23-RXN]
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*** [[original_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14761 14761]
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{{#set: common name=4-hydroxybenzoate biosynthesis V}}
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* LIGAND-RXN:
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{{#set: reaction found=4}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
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{{#set: total reaction=5}}
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* UNIPROT:
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{{#set: completion rate=80.0}}
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** [http://www.uniprot.org/uniprot/P25045 P25045]
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** [http://www.uniprot.org/uniprot/O15270 O15270]
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** [http://www.uniprot.org/uniprot/P48241 P48241]
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** [http://www.uniprot.org/uniprot/Q09925 Q09925]
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** [http://www.uniprot.org/uniprot/P40970 P40970]
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** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
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** [http://www.uniprot.org/uniprot/Q20375 Q20375]
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** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=serine palmitoyltransferase, LCB1 subunit}}
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{{#set: common name=serine palmitoyltransferase, LCB2 subunit}}
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{{#set: ec number=EC-2.3.1.50}}
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{{#set: gene associated=CHC_T00008326001|CHC_T00008326001_1|CHC_T00008697001|CHC_T00008697001_1}}
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{{#set: in pathway=PWY-5129|PWY3DJ-12|SPHINGOLIPID-SYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Revision as of 14:51, 23 May 2018

Pathway PWY-6435

  • taxonomic range:
  • common name:
    • 4-hydroxybenzoate biosynthesis V
  • Synonym(s):

Reaction(s) found

4 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-6435&oldid=12306"