Difference between revisions of "PWY-4101"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITRATE-DEHYDROGENASE-NAD+-RXN ISOCITRATE-DEHYDROGENASE-NAD+-RXN] == * direction: ** LEFT-TO-RIG...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4101 PWY-4101] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITRATE-DEHYDROGENASE-NAD+-RXN ISOCITRATE-DEHYDROGENASE-NAD+-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4101 PWY-4101] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-71275 TAX-71275]
 
* common name:
 
* common name:
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** Isocitrate dehydrogenase, NAD-dependent
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** D-sorbitol degradation I
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** isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial precursor
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.286 EC-1.1.1.286]
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** [http://enzyme.expasy.org/EC/1.1.1.41 EC-1.1.1.41]
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* Synonym(s):
 
* Synonym(s):
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** sorbitol utilization
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''3''' reactions in the full pathway
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** 1 [[THREO-DS-ISO-CITRATE]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* [[FRUCTOKINASE-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 D-threo-isocitrate[c] '''+''' 1 NAD+[c] '''=>''' 1 2-oxoglutarate[c] '''+''' 1 NADH[c] '''+''' 1 CO2[c]
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*** [[CHC_T00008037001_1]]
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*** [[CHC_T00007969001_1]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-arabidopsis_thaliana]]
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* [[CHC_T00008852001_1]]
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*** [[orthology-galdieria.sulphuraria]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[RXN-7644]]
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* [[CHC_T00009293001_1]]
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** 1 associated gene(s):
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00007340001_1]]
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* [[CHC_T00008852001]]
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** 2 reconstruction source(s) associated:
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** ORIGINAL_GENOME
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*** [[orthology-ectocarpus_siliculosus]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-galdieria.sulphuraria]]
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* [[CHC_T00009293001]]
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== Reaction(s) not found ==
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** ORIGINAL_GENOME
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14515 RXN-14515]
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***AUTOMATED-NAME-MATCH
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* [[CHC_T00009162001]]
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** ORIGINAL_GENOME
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***AUTOMATED-NAME-MATCH
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* [[CHC_T00009162001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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== Pathways  ==
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* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[original_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23632 23632]
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{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-71275}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00709 R00709]
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{{#set: common name=D-sorbitol degradation I}}
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* UNIPROT:
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{{#set: common name=sorbitol utilization}}
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** [http://www.uniprot.org/uniprot/P56472 P56472]
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{{#set: reaction found=2}}
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** [http://www.uniprot.org/uniprot/P41566 P41566]
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{{#set: total reaction=3}}
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** [http://www.uniprot.org/uniprot/P28834 P28834]
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{{#set: completion rate=67.0}}
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** [http://www.uniprot.org/uniprot/P41565 P41565]
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** [http://www.uniprot.org/uniprot/P41564 P41564]
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** [http://www.uniprot.org/uniprot/P50213 P50213]
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** [http://www.uniprot.org/uniprot/Q7M3F1 Q7M3F1]
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** [http://www.uniprot.org/uniprot/P41563 P41563]
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** [http://www.uniprot.org/uniprot/Q28479 Q28479]
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** [http://www.uniprot.org/uniprot/Q28480 Q28480]
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** [http://www.uniprot.org/uniprot/O65852 O65852]
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** [http://www.uniprot.org/uniprot/O65501 O65501]
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** [http://www.uniprot.org/uniprot/O82004 O82004]
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** [http://www.uniprot.org/uniprot/O43837 O43837]
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** [http://www.uniprot.org/uniprot/O13696 O13696]
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** [http://www.uniprot.org/uniprot/Q9USP8 Q9USP8]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Isocitrate dehydrogenase, NAD-dependent}}
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{{#set: common name=isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial precursor}}
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{{#set: ec number=EC-1.1.1.286}}
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{{#set: ec number=EC-1.1.1.41}}
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{{#set: gene associated=CHC_T00008852001_1|CHC_T00009293001_1|CHC_T00008852001|CHC_T00009293001|CHC_T00009162001|CHC_T00009162001_1}}
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{{#set: in pathway=PWY-5690|PWY66-398|PWY-6549}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Revision as of 14:56, 23 May 2018

Pathway PWY-4101

  • taxonomic range:
  • common name:
    • D-sorbitol degradation I
  • Synonym(s):
    • sorbitol utilization

Reaction(s) found

2 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-4101&oldid=12653"