Difference between revisions of "ASPAMINOTRANS-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15378 RXN-15378] == * direction: ** LEFT-TO-RIGHT * common name: ** succinate dehydrogenase (Co...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** aspartate amin...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15378 RXN-15378] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** succinate dehydrogenase (Complex II) flavoprotein subunit precursor
+
** aspartate aminotransferase
 +
** Aspartate aminotransferase
 +
** Aspartate transaminase
 +
** probable aspartate aminotransferase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.5.1 EC-1.3.5.1]
+
** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[SUC]][c] '''+''' 1 [[CPD-9612]][c] '''=>''' 1 [[FUM]][c] '''+''' 1 [[CPD-15301]][c]
+
** 1 [[L-ASPARTATE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[OXALACETIC_ACID]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 succinate[c] '''+''' 1 caldariellaquinone[c] '''=>''' 1 fumarate[c] '''+''' 1 caldariellaquinol[c]
+
** 1 L-aspartate[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 oxaloacetate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008943001_1]]
+
* Gene: [[CHC_T00010017001]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[annotation-original_genome]]
−
* [[CHC_T00007286001_1]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
* Gene: [[CHC_T00005085001_1]]
−
* [[CHC_T00007584001_1]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-arabidopsis_thaliana]]
−
* [[CHC_T00001817001_1]]
+
** Source: [[orthology-arabidopsis_thaliana]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-arabidopsis_thaliana]]
−
* [[CHC_T00006990001_1]]
+
* Gene: [[CHC_T00008432001]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[annotation-original_genome]]
−
* [[CHC_T00008943001]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** ORIGINAL_GENOME
+
* Gene: [[CHC_T00006498001_1]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00009477001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00003344001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00009477001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
* Gene: [[CHC_T00010197001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[MALATE-ASPARTATE-SHUTTLE-PWY]], L-aspartate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=MALATE-ASPARTATE-SHUTTLE-PWY MALATE-ASPARTATE-SHUTTLE-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[ASPARTATE-DEG1-PWY]], L-aspartate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE-DEG1-PWY ASPARTATE-DEG1-PWY]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[ASPARTATESYN-PWY]], L-aspartate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATESYN-PWY ASPARTATESYN-PWY]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLUTDEG-PWY]], L-glutamate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEG-PWY GLUTDEG-PWY]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[ASPARAGINE-DEG1-PWY-1]], L-asparagine degradation III (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-DEG1-PWY-1 ASPARAGINE-DEG1-PWY-1]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-arabidopsis_thaliana]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[original_genome]]
+
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=succinate dehydrogenase (Complex II) flavoprotein subunit precursor}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21824 21824]
−
{{#set: ec number=EC-1.3.5.1}}
+
* LIGAND-RXN:
−
{{#set: gene associated=CHC_T00008943001_1|CHC_T00007286001_1|CHC_T00007584001_1|CHC_T00001817001_1|CHC_T00006990001_1|CHC_T00008943001}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00355 R00355]
−
{{#set: in pathway=}}
+
* UNIPROT:
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/Q7LZ21 Q7LZ21]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P08906 P08906]
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
** [http://www.uniprot.org/uniprot/P12343 P12343]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q06191 Q06191]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q02635 Q02635]
−
{{#set: reconstruction source=original_genome}}
+
** [http://www.uniprot.org/uniprot/Q60317 Q60317]
 +
** [http://www.uniprot.org/uniprot/O28151 O28151]
 +
** [http://www.uniprot.org/uniprot/O67781 O67781]
 +
** [http://www.uniprot.org/uniprot/P08907 P08907]
 +
** [http://www.uniprot.org/uniprot/P12345 P12345]
 +
** [http://www.uniprot.org/uniprot/Q9X0Y2 Q9X0Y2]
 +
** [http://www.uniprot.org/uniprot/Q9PPF7 Q9PPF7]
 +
** [http://www.uniprot.org/uniprot/Q9JVS3 Q9JVS3]
 +
** [http://www.uniprot.org/uniprot/P53001 P53001]
 +
** [http://www.uniprot.org/uniprot/P96847 P96847]
 +
** [http://www.uniprot.org/uniprot/Q9K0P5 Q9K0P5]
 +
** [http://www.uniprot.org/uniprot/Q9X224 Q9X224]
 +
** [http://www.uniprot.org/uniprot/Q9Y9P0 Q9Y9P0]
 +
** [http://www.uniprot.org/uniprot/Q9RWP3 Q9RWP3]
 +
** [http://www.uniprot.org/uniprot/O66737 O66737]
 +
** [http://www.uniprot.org/uniprot/O28650 O28650]
 +
** [http://www.uniprot.org/uniprot/O30304 O30304]
 +
** [http://www.uniprot.org/uniprot/Q9CEK7 Q9CEK7]
 +
** [http://www.uniprot.org/uniprot/O27916 O27916]
 +
** [http://www.uniprot.org/uniprot/O05237 O05237]
 +
** [http://www.uniprot.org/uniprot/Q9YE99 Q9YE99]
 +
** [http://www.uniprot.org/uniprot/O25383 O25383]
 +
** [http://www.uniprot.org/uniprot/O27638 O27638]
 +
** [http://www.uniprot.org/uniprot/O96142 O96142]
 +
** [http://www.uniprot.org/uniprot/Q9ZLG5 Q9ZLG5]
 +
** [http://www.uniprot.org/uniprot/P00507 P00507]
 +
** [http://www.uniprot.org/uniprot/P44425 P44425]
 +
** [http://www.uniprot.org/uniprot/Q59569 Q59569]
 +
** [http://www.uniprot.org/uniprot/Q59197 Q59197]
 +
** [http://www.uniprot.org/uniprot/P37833 P37833]
 +
** [http://www.uniprot.org/uniprot/O48599 O48599]
 +
** [http://www.uniprot.org/uniprot/O33822 O33822]
 +
** [http://www.uniprot.org/uniprot/P05201 P05201]
 +
** [http://www.uniprot.org/uniprot/P05202 P05202]
 +
** [http://www.uniprot.org/uniprot/P14909 P14909]
 +
** [http://www.uniprot.org/uniprot/P17174 P17174]
 +
** [http://www.uniprot.org/uniprot/P33097 P33097]
 +
** [http://www.uniprot.org/uniprot/Q43057 Q43057]
 +
** [http://www.uniprot.org/uniprot/Q43305 Q43305]
 +
** [http://www.uniprot.org/uniprot/Q42794 Q42794]
 +
** [http://www.uniprot.org/uniprot/P12344 P12344]
 +
** [http://www.uniprot.org/uniprot/Q01802 Q01802]
 +
** [http://www.uniprot.org/uniprot/Q40325 Q40325]
 +
** [http://www.uniprot.org/uniprot/P36692 P36692]
 +
** [http://www.uniprot.org/uniprot/P28011 P28011]
 +
** [http://www.uniprot.org/uniprot/Q42391 Q42391]
 +
** [http://www.uniprot.org/uniprot/Q9L0L5 Q9L0L5]
 +
** [http://www.uniprot.org/uniprot/Q53951 Q53951]
 +
** [http://www.uniprot.org/uniprot/Q42803 Q42803]
 +
** [http://www.uniprot.org/uniprot/Q42425 Q42425]
 +
** [http://www.uniprot.org/uniprot/Q55128 Q55128]
 +
** [http://www.uniprot.org/uniprot/P72859 P72859]
 +
** [http://www.uniprot.org/uniprot/Q55453 Q55453]
 +
** [http://www.uniprot.org/uniprot/Q55679 Q55679]
 +
** [http://www.uniprot.org/uniprot/O48598 O48598]
 +
** [http://www.uniprot.org/uniprot/Q42991 Q42991]
 +
** [http://www.uniprot.org/uniprot/P46248 P46248]
 +
** [http://www.uniprot.org/uniprot/O48548 O48548]
 +
** [http://www.uniprot.org/uniprot/Q60013 Q60013]
 +
** [http://www.uniprot.org/uniprot/P28734 P28734]
 +
** [http://www.uniprot.org/uniprot/Q17994 Q17994]
 +
** [http://www.uniprot.org/uniprot/Q17983 Q17983]
 +
** [http://www.uniprot.org/uniprot/Q22066 Q22066]
 +
** [http://www.uniprot.org/uniprot/Q22067 Q22067]
 +
** [http://www.uniprot.org/uniprot/O01804 O01804]
 +
** [http://www.uniprot.org/uniprot/O54170 O54170]
 +
** [http://www.uniprot.org/uniprot/O42652 O42652]
 +
** [http://www.uniprot.org/uniprot/O94320 O94320]
 +
** [http://www.uniprot.org/uniprot/P46644 P46644]
 +
** [http://www.uniprot.org/uniprot/P00504 P00504]
 +
** [http://www.uniprot.org/uniprot/P00508 P00508]
 +
** [http://www.uniprot.org/uniprot/P00509 P00509]
 +
** [http://www.uniprot.org/uniprot/P00505 P00505]
 +
** [http://www.uniprot.org/uniprot/P00503 P00503]
 +
** [http://www.uniprot.org/uniprot/P00506 P00506]
 +
** [http://www.uniprot.org/uniprot/P26563 P26563]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=aspartate aminotransferase}}
 +
{{#set: common name=Aspartate aminotransferase}}
 +
{{#set: common name=Aspartate transaminase}}
 +
{{#set: common name=probable aspartate aminotransferase}}
 +
{{#set: ec number=EC-2.6.1.1}}
 +
{{#set: gene associated=CHC_T00010017001|CHC_T00005085001_1|CHC_T00008432001|CHC_T00006498001_1|CHC_T00009477001|CHC_T00003344001_1|CHC_T00009477001_1|CHC_T00010197001}}
 +
{{#set: in pathway=PWY-5913|MALATE-ASPARTATE-SHUTTLE-PWY|PWY-7383|ASPARTATE-DEG1-PWY|ASPARTATESYN-PWY|PWY-7117|GLUTDEG-PWY|PWY-7115|ASPARAGINE-DEG1-PWY-1}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:57, 23 May 2018

Reaction ASPAMINOTRANS-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • aspartate aminotransferase
    • Aspartate aminotransferase
    • Aspartate transaminase
    • probable aspartate aminotransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=ASPAMINOTRANS-RXN&oldid=12690"