Difference between revisions of "RXN-8620"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BILIVERDINE BILIVERDINE] == * smiles: ** C=CC1(=C(C)C(NC1=CC4(=C(C)C(CCC(=O)[O-])=C(C=C2(C(CCC(...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8620 RXN-8620] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With id...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BILIVERDINE BILIVERDINE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8620 RXN-8620] ==
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* smiles:
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* direction:
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** C=CC1(=C(C)C(NC1=CC4(=C(C)C(CCC(=O)[O-])=C(C=C2(C(CCC(=O)[O-])=C(C)C(=N2)C=C3(C(C)=C(C=C)C(=O)N3)))N4))=O)
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=QBUVFDKTZJNUPP-BBROENKCSA-L
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* common name:
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** biliverdin-IX-α
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* molecular weight:
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** 580.639   
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* Synonym(s):
 
* Synonym(s):
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** dehydrobilirubin
 
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** uteroverdine
 
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** biliverdine
 
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** biliverdin
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[1.3.7.2-RXN]]
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* With identifiers:
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* [[1.3.7.4-RXN]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-8848]][c] '''=>''' 1 [[CPD-8846]][c] '''+''' 1 [[CPD-8847]][c] '''+''' 2 [[WATER]][c] '''+''' 1 [[NADP]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[HEME-OXYGENASE-DECYCLIZING-RXN]]
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** 1 oxygen[c] '''+''' 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 (E,E)-geranyllinalool[c] '''=>''' 1 4,8,12-trimethyl-1,3,7,11-tridecatetraene[c] '''+''' 1 but-1-en-3-one[c] '''+''' 2 H2O[c] '''+''' 1 NADP+[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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== Pathways  ==
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* [[PWY-6668]], (E,E)-4,8,12-trimethyltrideca-1,3,7,11-tetraene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6668 PWY-6668]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[gap-filling]]
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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*** Tool: [[meneco]]
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**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
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* LIGAND-CPD:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00500 C00500]
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{{#set: in pathway=PWY-6668}}
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* CHEBI:
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{{#set: reconstruction category=gap-filling}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57991 57991]
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{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
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* METABOLIGHTS : MTBLC57991
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{{#set: reconstruction tool=meneco}}
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* PUBCHEM:
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{{#set: reconstruction comment=added for gapfilling}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25245769 25245769]
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* HMDB : HMDB01008
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{{#set: smiles=C=CC1(=C(C)C(NC1=CC4(=C(C)C(CCC(=O)[O-])=C(C=C2(C(CCC(=O)[O-])=C(C)C(=N2)C=C3(C(C)=C(C=C)C(=O)N3)))N4))=O)}}
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{{#set: inchi key=InChIKey=QBUVFDKTZJNUPP-BBROENKCSA-L}}
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{{#set: common name=biliverdin-IX-α}}
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{{#set: molecular weight=580.639    }}
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{{#set: common name=dehydrobilirubin|uteroverdine|biliverdine|biliverdin}}
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{{#set: consumed by=1.3.7.2-RXN|1.3.7.4-RXN}}
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{{#set: produced by=HEME-OXYGENASE-DECYCLIZING-RXN}}
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Latest revision as of 15:03, 23 May 2018

Reaction RXN-8620

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 oxygen[c] + 1 NADPH[c] + 1 H+[c] + 1 (E,E)-geranyllinalool[c] => 1 4,8,12-trimethyl-1,3,7,11-tridecatetraene[c] + 1 but-1-en-3-one[c] + 2 H2O[c] + 1 NADP+[c]

Genes associated with this reaction

Pathways

  • PWY-6668, (E,E)-4,8,12-trimethyltrideca-1,3,7,11-tetraene biosynthesis: PWY-6668
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-8620&oldid=13022"