Difference between revisions of "GLUTAMATE-DEHYDROGENASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEHYDROGENASE-RXN GLUTAMATE-DEHYDROGENASE-RXN] == * direction: ** REVERSIBLE * common nam...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEHYDROGENASE-RXN GLUTAMATE-DEHYDROGENASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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* common name:
 
* common name:
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** TCA cycle I (prokaryotic)
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** Glutamate dehydrogenase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.4.1.2 EC-1.4.1.2]
 
* Synonym(s):
 
* Synonym(s):
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** tricarboxylic acid cycle
 
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** citric acid cycle
 
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** Krebs cycle
 
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** Szent-Gyorgyi-Krebs cycle
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''9''' reactions found over '''10''' reactions in the full pathway
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* With identifiers:
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* [[2OXOGLUTARATEDEH-RXN]]
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** 1 [[NAD]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[2-KETOGLUTARATE]][c]
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* [[ACONITATEDEHYDR-RXN]]
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* With common name(s):
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* [[ACONITATEHYDR-RXN]]
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** 1 NAD+[c] '''+''' 1 L-glutamate[c] '''+''' 1 H2O[c] '''<=>''' 1 H+[c] '''+''' 1 ammonium[c] '''+''' 1 NADH[c] '''+''' 1 2-oxoglutarate[c]
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* [[CITSYN-RXN]]
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* [[FUMHYDR-RXN]]
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== Genes associated with this reaction  ==
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* [[ISOCITDEH-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[MALATE-DEH-RXN]]
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* Gene: [[CHC_T00010235001_1]]
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* [[RXN-14971]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* [[SUCCCOASYN-RXN]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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== Reaction(s) not found ==
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** Source: [[orthology-arabidopsis_thaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=MALATE-DEHYDROGENASE-ACCEPTOR-RXN MALATE-DEHYDROGENASE-ACCEPTOR-RXN]
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* Gene: [[CHC_T00010235001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEG1-PWY GLUTAMATE-DEG1-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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** '''9''' reactions found over '''18''' reactions in the full pathway
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* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
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** '''4''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5022]], 4-aminobutanoate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022]
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** '''1''' reactions found over '''7''' reactions in the full pathway
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* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate): [http://metacyc.org/META/NEW-IMAGE?object=ALACAT2-PWY ALACAT2-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7126]], ethylene biosynthesis IV (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7126 PWY-7126]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-arabidopsis_thaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=TCA TCA]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15133 15133]
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* ARACYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=TCA TCA]
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** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
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{{#set: taxonomic range=TAX-2}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.uniprot.org/uniprot/P20016 P20016]
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{{#set: common name=TCA cycle I (prokaryotic)}}
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** [http://www.uniprot.org/uniprot/P28997 P28997]
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{{#set: common name=tricarboxylic acid cycle|citric acid cycle|Krebs cycle|Szent-Gyorgyi-Krebs cycle}}
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** [http://www.uniprot.org/uniprot/P41755 P41755]
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{{#set: reaction found=9}}
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** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
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{{#set: reaction not found=10}}
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** [http://www.uniprot.org/uniprot/P00365 P00365]
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{{#set: completion rate=90.0}}
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** [http://www.uniprot.org/uniprot/P93541 P93541]
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** [http://www.uniprot.org/uniprot/P80319 P80319]
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** [http://www.uniprot.org/uniprot/P24295 P24295]
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** [http://www.uniprot.org/uniprot/P27346 P27346]
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** [http://www.uniprot.org/uniprot/P33327 P33327]
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** [http://www.uniprot.org/uniprot/Q43260 Q43260]
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** [http://www.uniprot.org/uniprot/O04937 O04937]
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** [http://www.uniprot.org/uniprot/Q25415 Q25415]
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** [http://www.uniprot.org/uniprot/O74024 O74024]
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** [http://www.uniprot.org/uniprot/O59650 O59650]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Glutamate dehydrogenase}}
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{{#set: ec number=EC-1.4.1.2}}
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{{#set: gene associated=CHC_T00010235001_1|CHC_T00010235001}}
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{{#set: in pathway=GLUTAMATE-DEG1-PWY|PWY-6728|P162-PWY|PWY-5022|ALACAT2-PWY|PWY-7126}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:05, 23 May 2018

Reaction GLUTAMATE-DEHYDROGENASE-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Glutamate dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD+[c] + 1 L-glutamate[c] + 1 H2O[c] <=> 1 H+[c] + 1 ammonium[c] + 1 NADH[c] + 1 2-oxoglutarate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • GLUTAMATE-DEG1-PWY, L-glutamate degradation I: GLUTAMATE-DEG1-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 9 reactions found over 18 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate): P162-PWY
    • 4 reactions found over 11 reactions in the full pathway
  • PWY-5022, 4-aminobutanoate degradation V: PWY-5022
    • 1 reactions found over 7 reactions in the full pathway
  • ALACAT2-PWY, L-alanine degradation II (to D-lactate): ALACAT2-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7126, ethylene biosynthesis IV (engineered): PWY-7126
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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