Difference between revisions of "SUCCCOASYN-RXN"
From metabolic_network
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=MALONYL-ACP MALONYL-ACP] == * common name: ** a malonyl-[acp] * Synonym(s): ** malonyl-[acyl-ca...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy....") |
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− | [[Category: | + | [[Category:Reaction]] |
− | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] == |
− | * | + | * direction: |
− | ** | + | ** REVERSIBLE |
+ | * ec number: | ||
+ | ** [http://enzyme.expasy.org/EC/6.2.1.5 EC-6.2.1.5] | ||
* Synonym(s): | * Synonym(s): | ||
− | ** | + | ** Succinate thiokinase |
− | ** | + | ** succinyl CoA synthesis |
− | + | ||
− | == Reaction | + | == Reaction Formula == |
− | * [[ | + | * With identifiers: |
− | * [[ | + | ** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c] |
− | * [[ | + | * With common name(s): |
− | * [[ | + | ** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 succinate[c] '''<=>''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 succinyl-CoA[c] |
− | * [[ | + | |
− | * [[ | + | == Genes associated with this reaction == |
− | * [[ | + | Genes have been associated with this reaction based on different elements listed below. |
− | * [[ | + | * Gene: [[CHC_T00009212001_1]] |
− | * [[ | + | ** Source: [[orthology-galdieria.sulphuraria]] |
− | * [[ | + | ** Source: [[orthology-ectocarpus_siliculosus]] |
− | * [[ | + | ** Source: [[orthology-arabidopsis_thaliana]] |
− | * [[ | + | * Gene: [[CHC_T00008602001_1]] |
− | + | ** Source: [[orthology-galdieria.sulphuraria]] | |
− | * [[ | + | ** Source: [[orthology-ectocarpus_siliculosus]] |
− | * [[ | + | ** Source: [[orthology-arabidopsis_thaliana]] |
− | * [[ | + | == Pathways == |
− | * [[ | + | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] |
− | * [[ | + | ** '''10''' reactions found over '''11''' reactions in the full pathway |
− | * [[ | + | * [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY] |
− | * [[ | + | ** '''5''' reactions found over '''7''' reactions in the full pathway |
− | * [[ | + | * [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384] |
− | + | ** '''5''' reactions found over '''12''' reactions in the full pathway | |
− | * [[ | + | * [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392] |
− | == | + | ** '''6''' reactions found over '''12''' reactions in the full pathway |
− | * [[ | + | * [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] |
− | * [[ | + | ** '''9''' reactions found over '''10''' reactions in the full pathway |
+ | * [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY] | ||
+ | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] | ||
+ | ** '''8''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728] | ||
+ | ** '''9''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-5538]], pyruvate fermentation to acetate VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5538 PWY-5538] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398] | ||
+ | ** '''11''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690] | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * Category: [[orthology]] | ||
+ | ** Source: [[orthology-arabidopsis_thaliana]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | *** Tool: [[pantograph]] | ||
== External links == | == External links == | ||
− | {{#set: | + | * RHEA: |
− | {{#set: common name= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17661 17661] |
− | {{#set: | + | * LIGAND-RXN: |
− | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405] |
− | {{#set: | + | * UNIPROT: |
+ | ** [http://www.uniprot.org/uniprot/O28098 O28098] | ||
+ | ** [http://www.uniprot.org/uniprot/P53594 P53594] | ||
+ | ** [http://www.uniprot.org/uniprot/O28733 O28733] | ||
+ | ** [http://www.uniprot.org/uniprot/P45101 P45101] | ||
+ | ** [http://www.uniprot.org/uniprot/P45102 P45102] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58643 Q58643] | ||
+ | ** [http://www.uniprot.org/uniprot/O26663 O26663] | ||
+ | ** [http://www.uniprot.org/uniprot/P80886 P80886] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9] | ||
+ | ** [http://www.uniprot.org/uniprot/P80865 P80865] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0] | ||
+ | ** [http://www.uniprot.org/uniprot/O67729 O67729] | ||
+ | ** [http://www.uniprot.org/uniprot/O67546 O67546] | ||
+ | ** [http://www.uniprot.org/uniprot/P53593 P53593] | ||
+ | ** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A836 P0A836] | ||
+ | ** [http://www.uniprot.org/uniprot/O82662 O82662] | ||
+ | {{#set: direction=REVERSIBLE}} | ||
+ | {{#set: ec number=EC-6.2.1.5}} | ||
+ | {{#set: common name=Succinate thiokinase|succinyl CoA synthesis}} | ||
+ | {{#set: gene associated=CHC_T00009212001_1|CHC_T00008602001_1}} | ||
+ | {{#set: in pathway=PWY-5913|P42-PWY|PWY-7384|PWY-5392|TCA|P23-PWY|PWY-6969|PWY-6728|PWY-5538|PWY-5537|PWY66-398|PWY-5690}} | ||
+ | {{#set: reconstruction category=orthology}} | ||
+ | {{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}} | ||
+ | {{#set: reconstruction tool=pantograph}} |
Revision as of 16:48, 23 May 2018
Contents
Reaction SUCCCOASYN-RXN
- direction:
- REVERSIBLE
- ec number:
- Synonym(s):
- Succinate thiokinase
- succinyl CoA synthesis
Reaction Formula
- With identifiers:
- With common name(s):
- 1 ATP[c] + 1 coenzyme A[c] + 1 succinate[c] <=> 1 ADP[c] + 1 phosphate[c] + 1 succinyl-CoA[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: CHC_T00009212001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
- Gene: CHC_T00008602001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
Pathways
- PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
- 10 reactions found over 11 reactions in the full pathway
- P42-PWY, incomplete reductive TCA cycle: P42-PWY
- 5 reactions found over 7 reactions in the full pathway
- PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial): PWY-7384
- 5 reactions found over 12 reactions in the full pathway
- PWY-5392, reductive TCA cycle II: PWY-5392
- 6 reactions found over 12 reactions in the full pathway
- TCA, TCA cycle I (prokaryotic): TCA
- 9 reactions found over 10 reactions in the full pathway
- P23-PWY, reductive TCA cycle I: P23-PWY
- 10 reactions found over 12 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
- 8 reactions found over 12 reactions in the full pathway
- PWY-6728, methylaspartate cycle: PWY-6728
- 9 reactions found over 18 reactions in the full pathway
- PWY-5538, pyruvate fermentation to acetate VI: PWY-5538
- 2 reactions found over 4 reactions in the full pathway
- PWY-5537, pyruvate fermentation to acetate V: PWY-5537
- 2 reactions found over 4 reactions in the full pathway
- PWY66-398, TCA cycle III (animals): PWY66-398
- 11 reactions found over 11 reactions in the full pathway
- PWY-5690, TCA cycle II (plants and fungi): PWY-5690
- 9 reactions found over 9 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-galdieria.sulphuraria
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: