Difference between revisions of "RXN0-5063"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5063 RXN0-5063] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5063 RXN0-5063] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.8.4.3 EC-2.8.4.3]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
+
 
* Synonym(s):
 
* Synonym(s):
−
** (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
 
−
** β-hydroxyacyl-ACP dehydrase
 
−
** HDDase
 
−
** β-hydroxyacyl-acyl carrier protein dehydratase
 
−
** FabA
 
−
** β-hydroxydecanoyl thiol ester dehydrase
 
−
** β-hydroxydecanoate dehydrase
 
−
** D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[Trans-D2-decenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[6-Dimethylallyladenosine37-tRNAs]][c] '''+''' 1 [[Donor-H2]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''=>''' 1 [[CPD-11592]][c] '''+''' 1 [[Acceptor]][c] '''+''' 1 [[CH33ADO]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[MET]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a (3R)-3-hydroxydecanoyl-[acp][c] '''=>''' 1 a (2E)-dec-2-enoyl-[acp][c] '''+''' 1 H2O[c]
+
** 1 N6-dimethylallyladenosine37 in tRNA[c] '''+''' 1 a reduced electron acceptor[c] '''+''' 2 S-adenosyl-L-methionine[c] '''+''' 1 a sulfurated [sulfur carrier][c] '''=>''' 1 2-methylthio-N6-dimethylallyladenosine37 in tRNA[c] '''+''' 1 an oxidized electron acceptor[c] '''+''' 1 5'-deoxyadenosine[c] '''+''' 1 an unsulfurated [sulfur carrier][c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 2 H+[c] '''+''' 1 L-methionine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[CHC_T00003933001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00000153001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 
−
** '''22''' reactions found over '''31''' reactions in the full pathway
 
−
* [[PWY0-862]], (5Z)-dodec-5-enoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* Category: [[orthology]]
−
** [[meneco]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** [[added for gapfilling]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: ec number=EC-2.8.4.3}}
−
{{#set: ec number=EC-2.3.1.85}}
+
{{#set: gene associated=CHC_T00003933001_1|CHC_T00000153001_1}}
−
{{#set: ec number=EC-4.2.1.59}}
+
{{#set: in pathway=}}
−
{{#set: common name=(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase|β-hydroxyacyl-ACP dehydrase|HDDase|β-hydroxyacyl-acyl carrier protein dehydratase|FabA|β-hydroxydecanoyl thiol ester dehydrase|β-hydroxydecanoate dehydrase|D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: in pathway=PWY-5971|PWY-5994|PWY0-862}}
+
{{#set: reconstruction source=orthology-ectocarpus_siliculosus}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=meneco}}
+
−
{{#set: reconstruction source=added for gapfilling}}
+

Latest revision as of 15:52, 23 May 2018

Reaction RXN0-5063

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN0-5063&oldid=15562"