Difference between revisions of "PWY-5136"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5-OXOPROLINASE-ATP-HYDROLYSING-RXN 5-OXOPROLINASE-ATP-HYDROLYSING-RXN] == * direction: ** LEFT-TO-R...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5-OXOPROLINASE-ATP-HYDROLYSING-RXN 5-OXOPROLINASE-ATP-HYDROLYSING-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** 5-oxo-L-prolinase
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** fatty acid β-oxidation II (peroxisome)
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* ec number:
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** [http://enzyme.expasy.org/EC/3.5.2.9 EC-3.5.2.9]
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* Synonym(s):
 
* Synonym(s):
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** fatty acid β-oxidation II (plants)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''5''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 2 [[WATER]][c] '''+''' 1 [[5-OXOPROLINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[Pi]][c]
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* [[ACYLCOASYN-RXN]]
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* With common name(s):
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** 6 associated gene(s):
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** 1 ATP[c] '''+''' 2 H2O[c] '''+''' 1 5-oxo-L-proline[c] '''=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 L-glutamate[c] '''+''' 1 phosphate[c]
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*** [[CHC_T00008811001]]
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*** [[CHC_T00008811001_1]]
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== Genes associated with this reaction  ==
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*** [[CHC_T00008160001_1]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[CHC_T00008500001_1]]
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* [[CHC_T00008487001_1]]
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*** [[CHC_T00009428001]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00009428001_1]]
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** [[pantograph]]-[[a.taliana]]
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** 3 reconstruction source(s) associated:
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* [[CHC_T00008487001]]
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*** [[annotation-original_genome]]
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** ORIGINAL_GENOME
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*** [[orthology-ectocarpus_siliculosus]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-galdieria.sulphuraria]]
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== Pathways  ==
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* [[ENOYL-COA-HYDRAT-RXN]]
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* [[PWY-4041]], γ-glutamyl cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4041 PWY-4041]
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** 5 associated gene(s):
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** '''4''' reactions found over '''6''' reactions in the full pathway
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*** [[CHC_T00009110001]]
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== Reconstruction information  ==
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*** [[CHC_T00009422001_1]]
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* [[orthology]]:
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*** [[CHC_T00009110001_1]]
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** [[pantograph]]:
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*** [[CHC_T00009190001_1]]
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*** [[galdieria.sulphuraria]]
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*** [[CHC_T00009349001_1]]
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*** [[a.taliana]]
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** 3 reconstruction source(s) associated:
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* [[annotation]]:
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*** [[annotation-original_genome]]
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** [[pathwaytools]]:
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*** [[orthology-ectocarpus_siliculosus]]
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*** [[original_genome]]
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*** [[orthology-galdieria.sulphuraria]]
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* [[KETOACYLCOATHIOL-RXN]]
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** 2 associated gene(s):
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*** [[CHC_T00009422001_1]]
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*** [[CHC_T00009349001_1]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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* [[OHACYL-COA-DEHYDROG-RXN]]
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** 3 associated gene(s):
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*** [[CHC_T00009422001_1]]
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*** [[CHC_T00008557001_1]]
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*** [[CHC_T00009349001_1]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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* [[RXN-11026]]
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** 10 associated gene(s):
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*** [[CHC_T00009531001]]
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*** [[CHC_T00008400001_1]]
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*** [[CHC_T00008400001]]
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*** [[CHC_T00008935001_1]]
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*** [[CHC_T00008935001]]
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*** [[CHC_T00009142001]]
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*** [[CHC_T00009531001_1]]
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*** [[CHC_T00007910001_1]]
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*** [[CHC_T00009142001_1]]
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*** [[CHC_T00008478001_1]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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*** [[orthology-galdieria.sulphuraria]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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* METACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10348 10348]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=PWY-5136 PWY-5136]
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* LIGAND-RXN:
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* ARACYC:
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** [http://www.genome.jp/dbget-bin/www_bget?R00251 R00251]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5136 PWY-5136]
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* UNIPROT:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.uniprot.org/uniprot/P97608 P97608]
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{{#set: common name=fatty acid β-oxidation II (peroxisome)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=fatty acid β-oxidation II (plants)}}
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{{#set: common name=5-oxo-L-prolinase}}
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{{#set: reaction found=5}}
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{{#set: ec number=EC-3.5.2.9}}
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{{#set: total reaction=5}}
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{{#set: gene associated=CHC_T00008487001_1|CHC_T00008487001}}
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{{#set: completion rate=100.0}}
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{{#set: in pathway=PWY-4041}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Revision as of 16:17, 23 May 2018

Pathway PWY-5136

  • taxonomic range:
  • common name:
    • fatty acid β-oxidation II (peroxisome)
  • Synonym(s):
    • fatty acid β-oxidation II (plants)

Reaction(s) found

5 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-5136&oldid=16707"