Difference between revisions of "RXN-16418"

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(Created page with "Category:Gene == Gene CHC_T00009377001 == * left end position: ** 505 * transcription direction: ** POSITIVE * right end position: ** 1677 * centisome position: ** 5.27319...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16418 RXN-16418] == * direction: ** LEFT-TO-RIGHT * common name: ** long-chain-fatty-acid-CoA l...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene CHC_T00009377001 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16418 RXN-16418] ==
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* left end position:
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* direction:
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** 505
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** long-chain-fatty-acid-CoA ligase
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* right end position:
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* ec number:
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** 1677
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* centisome position:
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** 5.273198500e-2
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[RXN-9510]]
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* With identifiers:
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** original_genome
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** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[OCTADEC-9-ENE-118-DIOIC-ACID]][c] '''=>''' 1 [[CPD-17624]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 α,ω-9Z-octadecenedioate[c] '''=>''' 1 ω-carboxy-(9Z)-octadec-9-enoyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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* [[PWY-7723]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[CHC_T00009428001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00008811001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00008500001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008811001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00008160001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00009428001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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== Pathways ==
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* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
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** '''8''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=505}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=long-chain-fatty-acid-CoA ligase}}
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{{#set: right end position=1677}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: centisome position=5.273198500e-2}}
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{{#set: gene associated=CHC_T00009428001|CHC_T00008811001|CHC_T00008500001_1|CHC_T00008811001_1|CHC_T00008160001_1|CHC_T00009428001_1}}
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{{#set: reaction associated=RXN-9510}}
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{{#set: in pathway=PWY-1121}}
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{{#set: pathway associated=PWY-7723}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-original_genome|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:19, 23 May 2018

Reaction RXN-16418

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long-chain-fatty-acid-CoA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 ATP[c] + 1 α,ω-9Z-octadecenedioate[c] => 1 ω-carboxy-(9Z)-octadec-9-enoyl-CoA[c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1121, suberin monomers biosynthesis: PWY-1121
    • 8 reactions found over 19 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-16418&oldid=16817"