Difference between revisions of "RXN-16378"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UBIQUITIN--PROTEIN-LIGASE-RXN UBIQUITIN--PROTEIN-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16378 RXN-16378] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/1.1...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UBIQUITIN--PROTEIN-LIGASE-RXN UBIQUITIN--PROTEIN-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16378 RXN-16378] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
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** REVERSIBLE
−
* common name:
+
−
** ubiquitin-activating enzyme E1
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.2.1.45 EC-6.2.1.45]
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** [http://enzyme.expasy.org/EC/1.14.19.20 EC-1.14.19.20]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[Ubiquitin-C-Terminal-Glycine]][c] '''+''' 1 [[Ubiquitin-activating-protein-E1-L-cys]][c] '''=>''' 1 [[S-ubiquitinyl-UAP-E1-L-cysteine]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
+
** 2 [[FERROCYTOCHROME-B5]][c] '''+''' 1 [[Delta7-Steroids]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''<=>''' 2 [[WATER]][c] '''+''' 1 [[Delta5-Delta7-Steroids]][c] '''+''' 2 [[FERRICYTOCHROME-B5]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 a [ubiquitin] C-terminal glycine[c] '''+''' 1 an [E1 ubiquitin-activating enzyme]-L-cysteine[c] '''=>''' 1 an S-ubiquitinyl-[E1 ubiquitin-activating enzyme]-L-cysteine[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
+
** 2 a ferrocytochrome b5[c] '''+''' 1 a &Delta;7-sterol[c] '''+''' 2 H+[c] '''+''' 1 oxygen[c] '''<=>''' 2 H2O[c] '''+''' 1 a &Delta;5,7-sterol[c] '''+''' 2 a ferricytochrome b5[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008644001_1]]
+
* Gene: [[CHC_T00006481001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** Source: [[orthology-galdieria.sulphuraria]]
−
* [[CHC_T00010346001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00005234001_1]]
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−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00005531001_1]]
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−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00006277001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00008443001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00010007001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00008502001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00006427001_1]]
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−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00000387001_1]]
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−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00004841001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00003230001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00002417001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00009358001_1]]
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−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00004399001_1]]
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−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00007701001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00010352001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00002791001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00005498001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00003966001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00006980001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00006794001_1]]
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−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00002451001_1]]
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−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00002169001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00009466001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00008828001_1]]
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−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00009159001_1]]
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−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00003204001_1]]
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−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00008644001]]
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−
** ORIGINAL_GENOME
+
−
***AUTOMATED-NAME-MATCH
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−
* [[CHC_T00010007001]]
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−
** ORIGINAL_GENOME
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−
***AUTOMATED-NAME-MATCH
+
−
* [[CHC_T00000123001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00002999001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00004299001_1]]
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−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00007651001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00004379001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7511]], protein ubiquitylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7511 PWY-7511]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[original_genome]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03876 R03876]
+
{{#set: ec number=EC-1.14.19.20}}
−
* UNIPROT:
+
{{#set: gene associated=CHC_T00006481001_1}}
−
** [http://www.uniprot.org/uniprot/P22314 P22314]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/P49459 P49459]
+
−
** [http://www.uniprot.org/uniprot/P62256 P62256]
+
−
** [http://www.uniprot.org/uniprot/P63146 P63146]
+
−
** [http://www.uniprot.org/uniprot/P28263 P28263]
+
−
** [http://www.uniprot.org/uniprot/Q02053 Q02053]
+
−
** [http://www.uniprot.org/uniprot/P62257 P62257]
+
−
** [http://www.uniprot.org/uniprot/P61088 P61088]
+
−
** [http://www.uniprot.org/uniprot/P63279 P63279]
+
−
** [http://www.uniprot.org/uniprot/P19812 P19812]
+
−
** [http://www.uniprot.org/uniprot/P21734 P21734]
+
−
** [http://www.uniprot.org/uniprot/P25869 P25869]
+
−
** [http://www.uniprot.org/uniprot/P31254 P31254]
+
−
** [http://www.uniprot.org/uniprot/P15731 P15731]
+
−
** [http://www.uniprot.org/uniprot/P15732 P15732]
+
−
** [http://www.uniprot.org/uniprot/P29340 P29340]
+
−
** [http://www.uniprot.org/uniprot/P35133 P35133]
+
−
** [http://www.uniprot.org/uniprot/P35134 P35134]
+
−
** [http://www.uniprot.org/uniprot/P35132 P35132]
+
−
** [http://www.uniprot.org/uniprot/P33296 P33296]
+
−
** [http://www.uniprot.org/uniprot/P22515 P22515]
+
−
** [http://www.uniprot.org/uniprot/P39940 P39940]
+
−
** [http://www.uniprot.org/uniprot/P42748 P42748]
+
−
** [http://www.uniprot.org/uniprot/P42750 P42750]
+
−
** [http://www.uniprot.org/uniprot/P42749 P42749]
+
−
** [http://www.uniprot.org/uniprot/P42747 P42747]
+
−
** [http://www.uniprot.org/uniprot/P50623 P50623]
+
−
** [http://www.uniprot.org/uniprot/Q42973 Q42973]
+
−
** [http://www.uniprot.org/uniprot/P40984 P40984]
+
−
** [http://www.uniprot.org/uniprot/Q92462 Q92462]
+
−
** [http://www.uniprot.org/uniprot/Q42540 Q42540]
+
−
** [http://www.uniprot.org/uniprot/P93028 P93028]
+
−
** [http://www.uniprot.org/uniprot/P93393 P93393]
+
−
** [http://www.uniprot.org/uniprot/P31252 P31252]
+
−
** [http://www.uniprot.org/uniprot/P52486 P52486]
+
−
** [http://www.uniprot.org/uniprot/Q9YGM6 Q9YGM6]
+
−
** [http://www.uniprot.org/uniprot/O42646 O42646]
+
−
** [http://www.uniprot.org/uniprot/O15979 O15979]
+
−
** [http://www.uniprot.org/uniprot/P23566 P23566]
+
−
** [http://www.uniprot.org/uniprot/Q96PU5 Q96PU5]
+
−
** [http://www.uniprot.org/uniprot/P27949 P27949]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=ubiquitin-activating enzyme E1}}
+
−
{{#set: ec number=EC-6.2.1.45}}
+
−
{{#set: gene associated=CHC_T00008644001_1|CHC_T00010346001_1|CHC_T00005234001_1|CHC_T00005531001_1|CHC_T00006277001_1|CHC_T00008443001_1|CHC_T00010007001_1|CHC_T00008502001_1|CHC_T00006427001_1|CHC_T00000387001_1|CHC_T00004841001_1|CHC_T00003230001_1|CHC_T00002417001_1|CHC_T00009358001_1|CHC_T00004399001_1|CHC_T00007701001_1|CHC_T00010352001_1|CHC_T00002791001_1|CHC_T00005498001_1|CHC_T00003966001_1|CHC_T00006980001_1|CHC_T00006794001_1|CHC_T00002451001_1|CHC_T00002169001_1|CHC_T00009466001_1|CHC_T00008828001_1|CHC_T00009159001_1|CHC_T00003204001_1|CHC_T00008644001|CHC_T00010007001|CHC_T00000123001_1|CHC_T00002999001_1|CHC_T00004299001_1|CHC_T00007651001_1|CHC_T00004379001_1}}
+
−
{{#set: in pathway=PWY-7511}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=original_genome}}
 

Revision as of 17:34, 23 May 2018

Reaction RXN-16378

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-16378&oldid=17513"