Difference between revisions of "3.5.1.98-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1125 RXN-1125] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.98-RXN 3.5.1.98-RXN] == * direction: ** REVERSIBLE * common name: ** histone deacetylase * ec...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1125 RXN-1125] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.98-RXN 3.5.1.98-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** histone deacetylase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.195 EC-1.1.1.195]
+
** [http://enzyme.expasy.org/EC/3.5.1.98 EC-3.5.1.98]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[SINAPALDEHYDE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SINAPYL-ALCOHOL]][c]
+
** 1 [[Histone-Acetyl-Lysine]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[ACET]][c] '''+''' 1 [[Histone-L-lysine]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 sinapaldehyde[c] '''+''' 1 H+[c] '''+''' 1 NADPH[c] '''=>''' 1 NADP+[c] '''+''' 1 sinapyl alcohol[c]
+
** 1 a [histone]-N6-acetyl-L-lysine[c] '''+''' 1 H2O[c] '''<=>''' 1 acetate[c] '''+''' 1 a [histone]-L-lysine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00009372001_1]]
+
* Gene: [[CHC_T00008698001]]
−
** [[pantograph]]-[[a.taliana]]
+
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008970001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008970001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00005509001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00005143001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-361]], phenylpropanoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361]
 
−
** '''6''' reactions found over '''15''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** [[a.taliana]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03918 R03918]
+
{{#set: common name=histone deacetylase}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: ec number=EC-3.5.1.98}}
−
{{#set: ec number=EC-1.1.1.195}}
+
{{#set: gene associated=CHC_T00008698001|CHC_T00008970001|CHC_T00008970001_1|CHC_T00005509001_1|CHC_T00005143001_1}}
−
{{#set: gene associated=CHC_T00009372001_1}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY-361}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=annotation-original_genome|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=a.taliana}}
+

Revision as of 16:36, 23 May 2018

Reaction 3.5.1.98-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • histone deacetylase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=3.5.1.98-RXN&oldid=17581"