Difference between revisions of "RXN-2002"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16ALDOLASE-RXN F16ALDOLASE-RXN] == * direction: ** REVERSIBLE * common name: ** fructose-1,6-bipho...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2002 RXN-2002] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/4....")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16ALDOLASE-RXN F16ALDOLASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2002 RXN-2002] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** fructose-1,6-biphosphate aldolase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.2.13 EC-4.1.2.13]
+
** [http://enzyme.expasy.org/EC/4.2.1 EC-4.2.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''<=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[GAP]][c]
+
** 1 [[CINNAMOYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-513]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 fructose 1,6-bisphosphate[c] '''<=>''' 1 glycerone phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
+
** 1 (E)-cinnamoyl-CoA[c] '''+''' 1 H2O[c] '''=>''' 1 3-hydroxy-3-phenylpropanoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[CHC_T00008586001_1]]
 
−
** [[pantograph]]-[[galdieria.sulphuraria]]
 
−
* [[CHC_T00008586001]]
 
−
** ORIGINAL_GENOME
 
−
***AUTOMATED-NAME-MATCH
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
+
* [[PWY-6458]], benzoyl-CoA biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6458 PWY-6458]
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
+
* [[PWY-6446]], benzoate biosynthesis III (CoA-dependent, non-&beta;-oxidative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6446 PWY-6446]
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
+
* [[PWY-6443]], benzoate biosynthesis I (CoA-dependent, &beta;-oxidative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6443 PWY-6443]
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
** '''3''' reactions found over '''9''' reactions in the full pathway
−
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
+
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
+
−
** '''12''' reactions found over '''12''' reactions in the full pathway
+
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
+
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
+
−
** '''8''' reactions found over '''14''' reactions in the full pathway
+
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
+
−
** '''11''' reactions found over '''11''' reactions in the full pathway
+
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
+
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
+
−
** '''9''' reactions found over '''12''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[meneco]]
−
* [[annotation]]:
+
**** Comment: [[added for gapfilling]]
−
** [[pathwaytools]]:
+
−
*** [[original_genome]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14729 14729]
+
{{#set: ec number=EC-4.2.1}}
−
* LIGAND-RXN:
+
{{#set: in pathway=PWY-6458|PWY-6446|PWY-6443}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01068 R01068]
+
{{#set: reconstruction category=gap-filling}}
−
* UNIPROT:
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{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
** [http://www.uniprot.org/uniprot/Q7LZE8 Q7LZE8]
+
{{#set: reconstruction tool=meneco}}
−
** [http://www.uniprot.org/uniprot/Q7M2K6 Q7M2K6]
+
{{#set: reconstruction comment=added for gapfilling}}
−
** [http://www.uniprot.org/uniprot/P07764 P07764]
+
−
** [http://www.uniprot.org/uniprot/Q9URB4 Q9URB4]
+
−
** [http://www.uniprot.org/uniprot/P14223 P14223]
+
−
** [http://www.uniprot.org/uniprot/Q07159 Q07159]
+
−
** [http://www.uniprot.org/uniprot/P07752 P07752]
+
−
** [http://www.uniprot.org/uniprot/P14540 P14540]
+
−
** [http://www.uniprot.org/uniprot/P07341 P07341]
+
−
** [http://www.uniprot.org/uniprot/P0AB71 P0AB71]
+
−
** [http://www.uniprot.org/uniprot/P04075 P04075]
+
−
** [http://www.uniprot.org/uniprot/P05062 P05062]
+
−
** [http://www.uniprot.org/uniprot/P09972 P09972]
+
−
** [http://www.uniprot.org/uniprot/P05064 P05064]
+
−
** [http://www.uniprot.org/uniprot/P05063 P05063]
+
−
** [http://www.uniprot.org/uniprot/P22197 P22197]
+
−
** [http://www.uniprot.org/uniprot/P00883 P00883]
+
−
** [http://www.uniprot.org/uniprot/P27995 P27995]
+
−
** [http://www.uniprot.org/uniprot/P05065 P05065]
+
−
** [http://www.uniprot.org/uniprot/P00884 P00884]
+
−
** [http://www.uniprot.org/uniprot/P09117 P09117]
+
−
** [http://www.uniprot.org/uniprot/P17784 P17784]
+
−
** [http://www.uniprot.org/uniprot/P29356 P29356]
+
−
** [http://www.uniprot.org/uniprot/P16096 P16096]
+
−
** [http://www.uniprot.org/uniprot/P08440 P08440]
+
−
** [http://www.uniprot.org/uniprot/P44429 P44429]
+
−
** [http://www.uniprot.org/uniprot/P13243 P13243]
+
−
** [http://www.uniprot.org/uniprot/O51401 O51401]
+
−
** [http://www.uniprot.org/uniprot/P47269 P47269]
+
−
** [http://www.uniprot.org/uniprot/Q9CED4 Q9CED4]
+
−
** [http://www.uniprot.org/uniprot/Q9JW15 Q9JW15]
+
−
** [http://www.uniprot.org/uniprot/Q59100 Q59100]
+
−
** [http://www.uniprot.org/uniprot/Q59101 Q59101]
+
−
** [http://www.uniprot.org/uniprot/Q7M4Z5 Q7M4Z5]
+
−
** [http://www.uniprot.org/uniprot/Q7M4Z4 Q7M4Z4]
+
−
** [http://www.uniprot.org/uniprot/P19537 P19537]
+
−
** [http://www.uniprot.org/uniprot/Q01516 Q01516]
+
−
** [http://www.uniprot.org/uniprot/Q01517 Q01517]
+
−
** [http://www.uniprot.org/uniprot/Q91384 Q91384]
+
−
** [http://www.uniprot.org/uniprot/P52210 P52210]
+
−
** [http://www.uniprot.org/uniprot/Q42690 Q42690]
+
−
** [http://www.uniprot.org/uniprot/P53447 P53447]
+
−
** [http://www.uniprot.org/uniprot/Q7LZE9 Q7LZE9]
+
−
** [http://www.uniprot.org/uniprot/P53818 P53818]
+
−
** [http://www.uniprot.org/uniprot/P46257 P46257]
+
−
** [http://www.uniprot.org/uniprot/P46256 P46256]
+
−
** [http://www.uniprot.org/uniprot/Q42476 Q42476]
+
−
** [http://www.uniprot.org/uniprot/P75089 P75089]
+
−
** [http://www.uniprot.org/uniprot/O22486 O22486]
+
−
** [http://www.uniprot.org/uniprot/Q40677 Q40677]
+
−
** [http://www.uniprot.org/uniprot/O65581 O65581]
+
−
** [http://www.uniprot.org/uniprot/Q9SVJ6 Q9SVJ6]
+
−
** [http://www.uniprot.org/uniprot/P93565 P93565]
+
−
** [http://www.uniprot.org/uniprot/P50923 P50923]
+
−
** [http://www.uniprot.org/uniprot/O04975 O04975]
+
−
** [http://www.uniprot.org/uniprot/P36580 P36580]
+
−
** [http://www.uniprot.org/uniprot/P53444 P53444]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=fructose-1,6-biphosphate aldolase}}
+
−
{{#set: ec number=EC-4.1.2.13}}
+
−
{{#set: gene associated=CHC_T00008586001_1|CHC_T00008586001}}
+
−
{{#set: in pathway=PWY-1042|P341-PWY|GLUCONEO-PWY|SUCSYN-PWY|PWY-7385|GLYCOLYSIS|ANAGLYCOLYSIS-PWY|CALVIN-PWY|PWY-1861|PWY-6142|PWY-5484|P185-PWY|PWY66-399}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Revision as of 16:51, 23 May 2018

Reaction RXN-2002

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (E)-cinnamoyl-CoA[c] + 1 H2O[c] => 1 3-hydroxy-3-phenylpropanoyl-CoA[c]

Genes associated with this reaction

Pathways

  • PWY-6458, benzoyl-CoA biosynthesis: PWY-6458
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6446, benzoate biosynthesis III (CoA-dependent, non-β-oxidative): PWY-6446
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6443, benzoate biosynthesis I (CoA-dependent, β-oxidative): PWY-6443
    • 3 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-2002&oldid=18340"