Difference between revisions of "RXN-17473"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYCLOARTENOL-SYNTHASE-RXN CYCLOARTENOL-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17473 RXN-17473] == * direction: ** LEFT-TO-RIGHT * common name: ** biotin synthetase * Synonym...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYCLOARTENOL-SYNTHASE-RXN CYCLOARTENOL-SYNTHASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17473 RXN-17473] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** cycloartenol synthase
+
** biotin synthetase
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/5.4.99.8 EC-5.4.99.8]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[EPOXYSQUALENE]][c] '''=>''' 1 [[CYCLOARTENOL]][c]
+
** 1 [[CPD-5662]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CH33ADO]][c] '''+''' 1 [[BIOTIN]][c] '''+''' 1 [[MET]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (3S)-2,3-epoxy-2,3-dihydrosqualene[c] '''=>''' 1 cycloartenol[c]
+
** 1 9-mercaptodethiobiotin[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 H+[c] '''+''' 1 5'-deoxyadenosine[c] '''+''' 1 biotin[c] '''+''' 1 L-methionine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008265001]]
+
* Gene: [[CHC_T00009361001]]
−
** ORIGINAL_GENOME
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** Source: [[annotation-original_genome]]
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***AUTOMATED-NAME-MATCH
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*** Assignment: AUTOMATED-NAME-MATCH
−
* [[CHC_T00008265001_1]]
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* Gene: [[CHC_T00009361001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
** [[pantograph]]-[[a.taliana]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7154]], ergosterol biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7154 PWY-7154]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-2541]], plant sterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2541 PWY-2541]
 
−
** '''7''' reactions found over '''36''' reactions in the full pathway
 
−
* [[PWY-6098]], diploterol and cycloartenol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6098 PWY-6098]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6109]], mangrove triterpenoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6109 PWY-6109]
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7155]], 7-dehydroporiferasterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7155 PWY-7155]
 
−
** '''3''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6115]], avenacin biosynthesis, initial reactions: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6115 PWY-6115]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
*** [[a.taliana]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[annotation]]:
+
*** Tool: [[pantograph]]
−
** [[pathwaytools]]:
+
* Category: [[annotation]]
−
*** [[original_genome]]
+
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21311 21311]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03200 R03200]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/O23909 O23909]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=cycloartenol synthase}}
+
{{#set: common name=biotin synthetase}}
−
{{#set: ec number=EC-5.4.99.8}}
+
{{#set: gene associated=CHC_T00009361001|CHC_T00009361001_1}}
−
{{#set: gene associated=CHC_T00008265001|CHC_T00008265001_1}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY-7154|PWY-2541|PWY-6098|PWY-6109|PWY-7155|PWY-6115}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=annotation-original_genome|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Revision as of 16:54, 23 May 2018

Reaction RXN-17473

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • biotin synthetase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 9-mercaptodethiobiotin[c] + 1 S-adenosyl-L-methionine[c] => 1 H+[c] + 1 5'-deoxyadenosine[c] + 1 biotin[c] + 1 L-methionine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-17473&oldid=18485"