Difference between revisions of "RXN-12243"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14796 RXN-14796] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-CoA oxidase * ec numbe...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12243 RXN-12243] == * direction: ** LEFT-TO-RIGHT * common name: ** 15-cis-phytoene desaturase...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14796 RXN-14796] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12243 RXN-12243] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** acyl-CoA oxidase
+
** 15-cis-phytoene desaturase
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** phytoene desaturase (ambiguous)
 +
** PDS
 +
** plant-type phytoene desaturase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD-15684]][c] '''=>''' 1 [[CPD-15685]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
+
** 1 [[PLASTOQUINONE]][c] '''+''' 1 [[CPD-12321]][c] '''=>''' 1 [[CPD-13171]][c] '''+''' 1 [[Plastoquinols]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 oxygen[c] '''+''' 1 5-cis, 7-trans-tetradecadienoyl-CoA[c] '''=>''' 1 2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA[c] '''+''' 1 hydrogen peroxide[c]
+
** 1 a plastoquinone[c] '''+''' 1 15-cis-phytoene[c] '''=>''' 1 15,9'-di-cis-phytofluene[c] '''+''' 1 a plastoquinol[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008400001_1]]
+
* Gene: [[CHC_T00009492001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[CHC_T00008935001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00009531001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00008400001]]
+
−
** ORIGINAL_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[CHC_T00009142001]]
+
−
** ORIGINAL_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[CHC_T00009531001]]
+
−
** ORIGINAL_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[CHC_T00008478001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00007910001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00008935001]]
+
−
** ORIGINAL_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7340]], 9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7340 PWY-7340]
+
* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
−
** '''3''' reactions found over '''10''' reactions in the full pathway
+
** '''6''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[original_genome]]
+
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30194 30194]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R09653 R09653]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=acyl-CoA oxidase}}
+
{{#set: common name=15-cis-phytoene desaturase}}
−
{{#set: ec number=EC-1.3.3.6}}
+
{{#set: common name=phytoene desaturase (ambiguous)|PDS|plant-type phytoene desaturase}}
−
{{#set: gene associated=CHC_T00008400001_1|CHC_T00008935001_1|CHC_T00009531001_1|CHC_T00008400001|CHC_T00009142001|CHC_T00009531001|CHC_T00008478001_1|CHC_T00007910001_1|CHC_T00008935001}}
+
{{#set: gene associated=CHC_T00009492001_1}}
−
{{#set: in pathway=PWY-7340}}
+
{{#set: in pathway=PWY-6475}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=original_genome}}
 

Latest revision as of 16:54, 23 May 2018

Reaction RXN-12243

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 15-cis-phytoene desaturase
  • Synonym(s):
    • phytoene desaturase (ambiguous)
    • PDS
    • plant-type phytoene desaturase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-12243&oldid=18489"