Difference between revisions of "RXN-17368"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13378 CPD-13378] == * smiles: ** C9(C(C(C(C(OCC8(OC(OC3(C(O)C(O)C(OC(COC1(C(C(C(CO1)O)O)OC2...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17368 RXN-17368] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13378 CPD-13378] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17368 RXN-17368] ==
* smiles:
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* direction:
** C9(C(C(C(C(OCC8(OC(OC3(C(O)C(O)C(OC(COC1(C(C(C(CO1)O)O)OC2(C(C(C(C(O2)CO)O)O)O)))3)OC6(C(O)C(O)C(OC(COC4(C(C(C(CO4)O)O)OC5(C(C(C(C(O5)CO)O)O)O)))6)OC7(C(O)C(O)C(O)OC(CO)7))))C(O)C(O)C(O)8))O9)O)O)O)
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** LEFT-TO-RIGHT
* inchi key:
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* ec number:
** InChIKey=GSCHIGXDTVYEEM-MIGIYTHBSA-N
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** [http://enzyme.expasy.org/EC/6.3.4 EC-6.3.4]
* common name:
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** XLLG xyloglucan oligosaccharide
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* molecular weight:
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** 1387.215   
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* Synonym(s):
 
* Synonym(s):
  
== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
* [[RXN-12400]]
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* With identifiers:
== Reaction(s) known to produce the compound ==
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** 1 [[CPD-18779]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[CPD-18777]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[ADP]][c]
== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 (S)-4-deoxygadusol[c] '''+''' 1 ATP[c] '''+''' 1 glycine[c] '''=>''' 1 phosphate[c] '''+''' 1 mycosporine glycine[c] '''+''' 2 H+[c] '''+''' 1 ADP[c]
 +
 
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Scaffold115_51547_52668]]
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** Source: [[manual-pathmodel_inference]]
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== Pathways  ==
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* [[PWY-7751]], shinorine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7751 PWY-7751]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[gap-filling]]
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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*** Tool: [[meneco]]
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**** Comment: [[added for gapfilling]]
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* Category: [[manual]]
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** Source: [[manual-pathmodel_inference]]
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*** Comment: [[meneco;brawley2017;tblastn]]
 
== External links  ==
 
== External links  ==
* PUBCHEM:
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{{#set: direction=LEFT-TO-RIGHT}}
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=52940189 52940189]
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{{#set: ec number=EC-6.3.4}}
{{#set: smiles=C9(C(C(C(C(OCC8(OC(OC3(C(O)C(O)C(OC(COC1(C(C(C(CO1)O)O)OC2(C(C(C(C(O2)CO)O)O)O)))3)OC6(C(O)C(O)C(OC(COC4(C(C(C(CO4)O)O)OC5(C(C(C(C(O5)CO)O)O)O)))6)OC7(C(O)C(O)C(O)OC(CO)7))))C(O)C(O)C(O)8))O9)O)O)O)}}
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{{#set: gene associated=Scaffold115_51547_52668}}
{{#set: inchi key=InChIKey=GSCHIGXDTVYEEM-MIGIYTHBSA-N}}
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{{#set: in pathway=PWY-7751}}
{{#set: common name=XLLG xyloglucan oligosaccharide}}
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{{#set: reconstruction category=gap-filling|manual}}
{{#set: molecular weight=1387.215    }}
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{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium|manual-pathmodel_inference}}
{{#set: consumed by=RXN-12400}}
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{{#set: reconstruction tool=meneco}}
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{{#set: reconstruction comment=added for gapfilling|meneco;brawley2017;tblastn}}

Revision as of 16:56, 23 May 2018

Reaction RXN-17368

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (S)-4-deoxygadusol[c] + 1 ATP[c] + 1 glycine[c] => 1 phosphate[c] + 1 mycosporine glycine[c] + 2 H+[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7751, shinorine biosynthesis: PWY-7751
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links