Difference between revisions of "RXN-8975"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=C6 C6] == * smiles: ** CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8975 RXN-8975] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/2.7.8...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=C6 C6] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8975 RXN-8975] ==
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* smiles:
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* direction:
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** CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC2(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC([N+])C(=O)[O-])C(NC(C)C(=O)NC(C)C([O-])=O)=O)C(OC1(OC(CO)C(O)C(O)C(NC(=O)C)1))C(CO)O2))([O-])=O)C)C)C)C)C)C)C
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** REVERSIBLE
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* inchi key:
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* ec number:
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** InChIKey=OXJNZXDFVLDLEI-MBCYCBSHSA-J
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** [http://enzyme.expasy.org/EC/2.7.8.13 EC-2.7.8.13]
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* common name:
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** ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
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* molecular weight:
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** 1916.23   
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* Synonym(s):
 
* Synonym(s):
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** diphosphoundecaprenyl-[GlcNAc-MurNAc-pentapeptide]n
 
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** lipid intermediate II
 
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** undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-ala-γ-D-glu-meso-2,6-diaminopimeloyl-D-ala-D-ala
 
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** lipid II
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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== Reaction(s) of unknown directionality ==
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** 1 [[CPD-9646]][c] '''+''' 1 [[C3]][c] '''<=>''' 1 [[UMP]][c] '''+''' 1 [[C4]][c]
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* [[NACGLCTRANS-RXN]]
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* With common name(s):
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** 1 di-trans,octa-cis-undecaprenyl phosphate[c] '''+''' 1 UDP-N-acetyl-&alpha;-D-muramoyl-L-alanyl-&gamma;-D-glutamyl-L-lysyl-D-alanyl-D-alanine[c] '''<=>''' 1 UMP[c] '''+''' 1 undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-&gamma;-D-glutamyl-L-lysyl- D-alanyl-D-alanine[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[CHC_T00007237001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00006227001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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== Pathways  ==
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* [[PWY-6471]], peptidoglycan biosynthesis IV (Enterococcus faecium): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6471 PWY-6471]
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** '''3''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-5265]], peptidoglycan biosynthesis II (staphylococci): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5265 PWY-5265]
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** '''3''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=86289097 86289097]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21920 21920]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=61388 61388]
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** [http://www.genome.jp/dbget-bin/www_bget?R05629 R05629]
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* BIGG : uaagmda
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{{#set: direction=REVERSIBLE}}
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* LIGAND-CPD:
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{{#set: ec number=EC-2.7.8.13}}
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** [http://www.genome.jp/dbget-bin/www_bget?C05898 C05898]
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{{#set: gene associated=CHC_T00007237001_1|CHC_T00006227001_1}}
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{{#set: smiles=CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC2(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC([N+])C(=O)[O-])C(NC(C)C(=O)NC(C)C([O-])=O)=O)C(OC1(OC(CO)C(O)C(O)C(NC(=O)C)1))C(CO)O2))([O-])=O)C)C)C)C)C)C)C}}
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{{#set: in pathway=PWY-6471|PWY-5265}}
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{{#set: inchi key=InChIKey=OXJNZXDFVLDLEI-MBCYCBSHSA-J}}
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{{#set: reconstruction category=orthology}}
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{{#set: common name=ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-&gamma;-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine}}
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{{#set: reconstruction source=orthology-ectocarpus_siliculosus}}
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{{#set: molecular weight=1916.23    }}
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{{#set: reconstruction tool=pantograph}}
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{{#set: common name=diphosphoundecaprenyl-[GlcNAc-MurNAc-pentapeptide]n|lipid intermediate II|undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-ala-&gamma;-D-glu-meso-2,6-diaminopimeloyl-D-ala-D-ala|lipid II}}
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{{#set: consumed or produced by=NACGLCTRANS-RXN}}
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Revision as of 17:57, 23 May 2018

Reaction RXN-8975

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 di-trans,octa-cis-undecaprenyl phosphate[c] + 1 UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine[c] <=> 1 UMP[c] + 1 undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6471, peptidoglycan biosynthesis IV (Enterococcus faecium): PWY-6471
    • 3 reactions found over 10 reactions in the full pathway
  • PWY-5265, peptidoglycan biosynthesis II (staphylococci): PWY-5265
    • 3 reactions found over 10 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-8975&oldid=18668"