Difference between revisions of "RIBONUCLEOSIDE-DIP-REDUCTI-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2425 RXN-2425] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/4.2.1...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBONUCLEOSIDE-DIP-REDUCTI-RXN RIBONUCLEOSIDE-DIP-REDUCTI-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2425 RXN-2425] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBONUCLEOSIDE-DIP-REDUCTI-RXN RIBONUCLEOSIDE-DIP-REDUCTI-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** ribonucleoside-diphosphate reductase beta chain
 +
** ribonucleoside-diphosphate reductase alpha chain
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
+
** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[3-HYDROXYADIPYL-COA]][c] '''<=>''' 1 [[TRANS-23-DEHYDROADIPYL-COA]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[Red-Thioredoxin]][c] '''+''' 1 [[Ribonucleoside-Diphosphates]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Deoxy-Ribonucleoside-Diphosphates]][c] '''+''' 1 [[Ox-Thioredoxin]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (3S)-hydroxyadipyl-CoA[c] '''<=>''' 1 trans-2,3-dehydroadipyl-coA[c] '''+''' 1 H2O[c]
+
** 1 a reduced thioredoxin[c] '''+''' 1 a ribonucleoside diphosphate[c] '''=>''' 1 H2O[c] '''+''' 1 a 2'-deoxyribonucleoside 5'-diphosphate[c] '''+''' 1 an oxidized thioredoxin[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00009422001_1]]
+
* Gene: [[CHC_T00008864001]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[annotation-original_genome]]
−
* [[CHC_T00009110001_1]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
* Gene: [[CHC_T00008864001_1]]
−
** [[pantograph]]-[[a.taliana]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[CHC_T00008882001_1]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
** [[pantograph]]-[[a.taliana]]
+
* Gene: [[CHC_T00008926001]]
−
* [[CHC_T00009349001_1]]
+
** Source: [[annotation-original_genome]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[a.taliana]]
+
* Gene: [[CHC_T00008926001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-1361]], benzoyl-CoA degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1361 PWY-1361]
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY0-321]], phenylacetate degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-321 PWY0-321]
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
*** [[a.taliana]]
+
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34863 34863]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23252 23252]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R06942 R06942]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04294 R04294]
−
{{#set: direction=REVERSIBLE}}
+
* UNIPROT:
−
{{#set: ec number=EC-4.2.1.17}}
+
** [http://www.uniprot.org/uniprot/P89462 P89462]
−
{{#set: gene associated=CHC_T00009422001_1|CHC_T00009110001_1|CHC_T00008882001_1|CHC_T00009349001_1}}
+
** [http://www.uniprot.org/uniprot/Q7M0K8 Q7M0K8]
−
{{#set: in pathway=PWY-1361|PWY0-321}}
+
** [http://www.uniprot.org/uniprot/Q91YM8 Q91YM8]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/P09938 P09938]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/Q8IL94 Q8IL94]
−
{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
+
** [http://www.uniprot.org/uniprot/P32984 P32984]
 +
** [http://www.uniprot.org/uniprot/P50647 P50647]
 +
** [http://www.uniprot.org/uniprot/P50650 P50650]
 +
** [http://www.uniprot.org/uniprot/P50620 P50620]
 +
** [http://www.uniprot.org/uniprot/O83972 O83972]
 +
** [http://www.uniprot.org/uniprot/P43755 P43755]
 +
** [http://www.uniprot.org/uniprot/Q9PJ87 Q9PJ87]
 +
** [http://www.uniprot.org/uniprot/P39452 P39452]
 +
** [http://www.uniprot.org/uniprot/O66503 O66503]
 +
** [http://www.uniprot.org/uniprot/Q9JU45 Q9JU45]
 +
** [http://www.uniprot.org/uniprot/P47473 P47473]
 +
** [http://www.uniprot.org/uniprot/P37146 P37146]
 +
** [http://www.uniprot.org/uniprot/O26748 O26748]
 +
** [http://www.uniprot.org/uniprot/O28609 O28609]
 +
** [http://www.uniprot.org/uniprot/Q9PIR3 Q9PIR3]
 +
** [http://www.uniprot.org/uniprot/Q9JU43 Q9JU43]
 +
** [http://www.uniprot.org/uniprot/P55982 P55982]
 +
** [http://www.uniprot.org/uniprot/P03190 P03190]
 +
** [http://www.uniprot.org/uniprot/P00452 P00452]
 +
** [http://www.uniprot.org/uniprot/P69924 P69924]
 +
** [http://www.uniprot.org/uniprot/P07201 P07201]
 +
** [http://www.uniprot.org/uniprot/P26713 P26713]
 +
** [http://www.uniprot.org/uniprot/P11158 P11158]
 +
** [http://www.uniprot.org/uniprot/P11157 P11157]
 +
** [http://www.uniprot.org/uniprot/P23921 P23921]
 +
** [http://www.uniprot.org/uniprot/P31350 P31350]
 +
** [http://www.uniprot.org/uniprot/Q60561 Q60561]
 +
** [http://www.uniprot.org/uniprot/Q03604 Q03604]
 +
** [http://www.uniprot.org/uniprot/P37426 P37426]
 +
** [http://www.uniprot.org/uniprot/P17424 P17424]
 +
** [http://www.uniprot.org/uniprot/P36602 P36602]
 +
** [http://www.uniprot.org/uniprot/P36603 P36603]
 +
** [http://www.uniprot.org/uniprot/P50643 P50643]
 +
** [http://www.uniprot.org/uniprot/P50645 P50645]
 +
** [http://www.uniprot.org/uniprot/Q66662 Q66662]
 +
** [http://www.uniprot.org/uniprot/Q66663 Q66663]
 +
** [http://www.uniprot.org/uniprot/P49723 P49723]
 +
** [http://www.uniprot.org/uniprot/P50651 P50651]
 +
** [http://www.uniprot.org/uniprot/P78027 P78027]
 +
** [http://www.uniprot.org/uniprot/P74240 P74240]
 +
** [http://www.uniprot.org/uniprot/O36410 O36410]
 +
** [http://www.uniprot.org/uniprot/O36411 O36411]
 +
** [http://www.uniprot.org/uniprot/P49730 P49730]
 +
** [http://www.uniprot.org/uniprot/Q89941 Q89941]
 +
** [http://www.uniprot.org/uniprot/Q98526 Q98526]
 +
** [http://www.uniprot.org/uniprot/O41111 O41111]
 +
** [http://www.uniprot.org/uniprot/Q9YMK7 Q9YMK7]
 +
** [http://www.uniprot.org/uniprot/Q9YMI1 Q9YMI1]
 +
** [http://www.uniprot.org/uniprot/Q9YMI0 Q9YMI0]
 +
** [http://www.uniprot.org/uniprot/O57175 O57175]
 +
** [http://www.uniprot.org/uniprot/O39262 O39262]
 +
** [http://www.uniprot.org/uniprot/O39263 O39263]
 +
** [http://www.uniprot.org/uniprot/Q9YTK7 Q9YTK7]
 +
** [http://www.uniprot.org/uniprot/Q9YTK6 Q9YTK6]
 +
** [http://www.uniprot.org/uniprot/Q9UW15 Q9UW15]
 +
** [http://www.uniprot.org/uniprot/Q9SJ20 Q9SJ20]
 +
** [http://www.uniprot.org/uniprot/P03175 P03175]
 +
** [http://www.uniprot.org/uniprot/P09247 P09247]
 +
** [http://www.uniprot.org/uniprot/P09248 P09248]
 +
** [http://www.uniprot.org/uniprot/P28847 P28847]
 +
** [http://www.uniprot.org/uniprot/P28846 P28846]
 +
** [http://www.uniprot.org/uniprot/P69520 P69520]
 +
** [http://www.uniprot.org/uniprot/Q01319 Q01319]
 +
** [http://www.uniprot.org/uniprot/P10224 P10224]
 +
** [http://www.uniprot.org/uniprot/P16782 P16782]
 +
** [http://www.uniprot.org/uniprot/P20503 P20503]
 +
** [http://www.uniprot.org/uniprot/P26685 P26685]
 +
** [http://www.uniprot.org/uniprot/P12848 P12848]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ribonucleoside-diphosphate reductase beta chain}}
 +
{{#set: common name=ribonucleoside-diphosphate reductase alpha chain}}
 +
{{#set: ec number=EC-1.17.4.1}}
 +
{{#set: gene associated=CHC_T00008864001|CHC_T00008864001_1|CHC_T00008926001|CHC_T00008926001_1}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-original_genome|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:58, 23 May 2018

Reaction RIBONUCLEOSIDE-DIP-REDUCTI-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ribonucleoside-diphosphate reductase beta chain
    • ribonucleoside-diphosphate reductase alpha chain
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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