Difference between revisions of "SERINE-C-PALMITOYLTRANSFERASE-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIG...") |
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** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
| − | |||
| − | |||
* [[PWY3DJ-12]], ceramide de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-12 PWY3DJ-12] | * [[PWY3DJ-12]], ceramide de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-12 PWY3DJ-12] | ||
** '''3''' reactions found over '''4''' reactions in the full pathway | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOLIPID-SYN-PWY SPHINGOLIPID-SYN-PWY] | * [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOLIPID-SYN-PWY SPHINGOLIPID-SYN-PWY] | ||
** '''3''' reactions found over '''8''' reactions in the full pathway | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[PWY-5129]], sphingolipid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129] | ||
| + | ** '''3''' reactions found over '''13''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-galdieria.sulphuraria]] | ||
| + | *** Tool: [[pantograph]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
| − | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
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* RHEA: | * RHEA: | ||
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14761 14761] | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14761 14761] | ||
| − | |||
| − | |||
* UNIPROT: | * UNIPROT: | ||
** [http://www.uniprot.org/uniprot/P25045 P25045] | ** [http://www.uniprot.org/uniprot/P25045 P25045] | ||
| Line 63: | Line 61: | ||
** [http://www.uniprot.org/uniprot/Q20375 Q20375] | ** [http://www.uniprot.org/uniprot/Q20375 Q20375] | ||
** [http://www.uniprot.org/uniprot/Q9M304 Q9M304] | ** [http://www.uniprot.org/uniprot/Q9M304 Q9M304] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
{{#set: common name=serine palmitoyltransferase, LCB1 subunit}} | {{#set: common name=serine palmitoyltransferase, LCB1 subunit}} | ||
| Line 68: | Line 68: | ||
{{#set: ec number=EC-2.3.1.50}} | {{#set: ec number=EC-2.3.1.50}} | ||
{{#set: gene associated=CHC_T00008697001_1|CHC_T00008326001|CHC_T00008697001|CHC_T00008326001_1}} | {{#set: gene associated=CHC_T00008697001_1|CHC_T00008326001|CHC_T00008697001|CHC_T00008326001_1}} | ||
| − | {{#set: in pathway= | + | {{#set: in pathway=PWY3DJ-12|SPHINGOLIPID-SYN-PWY|PWY-5129}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source=annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus | + | {{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 15:58, 9 January 2019
Contents
Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- serine palmitoyltransferase, LCB1 subunit
- serine palmitoyltransferase, LCB2 subunit
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 PROTON[c] + 1 SER[c] + 1 PALMITYL-COA[c] => 1 CO-A[c] + 1 CARBON-DIOXIDE[c] + 1 DEHYDROSPHINGANINE[c]
- With common name(s):
- 1 H+[c] + 1 L-serine[c] + 1 palmitoyl-CoA[c] => 1 coenzyme A[c] + 1 CO2[c] + 1 3-dehydrosphinganine[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: CHC_T00008697001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
- Gene: CHC_T00008326001
- Source: annotation-original_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-original_genome
- Gene: CHC_T00008697001
- Source: annotation-original_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-original_genome
- Gene: CHC_T00008326001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
Pathways
- PWY3DJ-12, ceramide de novo biosynthesis: PWY3DJ-12
- 3 reactions found over 4 reactions in the full pathway
- SPHINGOLIPID-SYN-PWY, sphingolipid biosynthesis (yeast): SPHINGOLIPID-SYN-PWY
- 3 reactions found over 8 reactions in the full pathway
- PWY-5129, sphingolipid biosynthesis (plants): PWY-5129
- 3 reactions found over 13 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-galdieria.sulphuraria
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-galdieria.sulphuraria
- Category: annotation
- Source: annotation-original_genome
- Tool: pathwaytools
- Source: annotation-original_genome
External links
