Difference between revisions of "RIB5PISOM-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.or...") |
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** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
== Pathways == | == Pathways == | ||
| + | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY] | ||
| + | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] | * [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] | ||
** '''11''' reactions found over '''15''' reactions in the full pathway | ** '''11''' reactions found over '''15''' reactions in the full pathway | ||
| − | |||
| − | |||
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] | * [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] | ||
** '''10''' reactions found over '''10''' reactions in the full pathway | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
| − | |||
| − | |||
| − | |||
| − | |||
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY] | * [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY] | ||
** '''5''' reactions found over '''5''' reactions in the full pathway | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] | ||
| + | ** '''13''' reactions found over '''13''' reactions in the full pathway | ||
| + | * [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] | ||
| + | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-galdieria.sulphuraria]] | ||
| + | *** Tool: [[pantograph]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
| − | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14657 14657] | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14657 14657] | ||
| − | |||
| − | |||
* UNIPROT: | * UNIPROT: | ||
** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0] | ** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0] | ||
| Line 56: | Line 54: | ||
** [http://www.uniprot.org/uniprot/P74234 P74234] | ** [http://www.uniprot.org/uniprot/P74234 P74234] | ||
** [http://www.uniprot.org/uniprot/Q55766 Q55766] | ** [http://www.uniprot.org/uniprot/Q55766 Q55766] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056] | ||
{{#set: direction=REVERSIBLE}} | {{#set: direction=REVERSIBLE}} | ||
{{#set: ec number=EC-5.3.1.6}} | {{#set: ec number=EC-5.3.1.6}} | ||
{{#set: gene associated=CHC_T00009264001_1}} | {{#set: gene associated=CHC_T00009264001_1}} | ||
| − | {{#set: in pathway= | + | {{#set: in pathway=P185-PWY|P124-PWY|PWY-5723|NONOXIPENT-PWY|CALVIN-PWY|PWY-1861}} |
{{#set: reconstruction category=orthology}} | {{#set: reconstruction category=orthology}} | ||
| − | {{#set: reconstruction source=orthology- | + | {{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph}} | {{#set: reconstruction tool=pantograph}} | ||
Latest revision as of 16:03, 9 January 2019
Contents
Reaction RIB5PISOM-RXN
- direction:
- REVERSIBLE
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 RIBOSE-5P[c] <=> 1 RIBULOSE-5P[c]
- With common name(s):
- 1 D-ribose 5-phosphate[c] <=> 1 D-ribulose 5-phosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: CHC_T00009264001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
- Source: orthology-arabidopsis_thaliana
Pathways
- P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
- 11 reactions found over 12 reactions in the full pathway
- P124-PWY, Bifidobacterium shunt: P124-PWY
- 11 reactions found over 15 reactions in the full pathway
- PWY-5723, Rubisco shunt: PWY-5723
- 10 reactions found over 10 reactions in the full pathway
- NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
- 5 reactions found over 5 reactions in the full pathway
- CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
- 13 reactions found over 13 reactions in the full pathway
- PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
- 7 reactions found over 9 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-galdieria.sulphuraria
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-galdieria.sulphuraria
External links
- RHEA:
- UNIPROT:
- LIGAND-RXN:
