Difference between revisions of "P124-PWY"
From metabolic_network
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-...") |
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[[Category:Pathway]] | [[Category:Pathway]] | ||
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] == | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] == | ||
| − | |||
| − | |||
* common name: | * common name: | ||
** Bifidobacterium shunt | ** Bifidobacterium shunt | ||
| + | * taxonomic range: | ||
| + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174] | ||
* Synonym(s): | * Synonym(s): | ||
** Bifidum fermentation | ** Bifidum fermentation | ||
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*** [[CHC_T00005040001_1]] | *** [[CHC_T00005040001_1]] | ||
** 3 reconstruction source(s) associated: | ** 3 reconstruction source(s) associated: | ||
| + | *** [[orthology-galdieria.sulphuraria]] | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
*** [[orthology-ectocarpus_siliculosus]] | *** [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
* [[2PGADEHYDRAT-RXN]] | * [[2PGADEHYDRAT-RXN]] | ||
** 5 associated gene(s): | ** 5 associated gene(s): | ||
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*** [[CHC_T00009127001]] | *** [[CHC_T00009127001]] | ||
** 4 reconstruction source(s) associated: | ** 4 reconstruction source(s) associated: | ||
| + | *** [[orthology-galdieria.sulphuraria]] | ||
*** [[annotation-original_genome]] | *** [[annotation-original_genome]] | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
*** [[orthology-ectocarpus_siliculosus]] | *** [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
* [[3PGAREARR-RXN]] | * [[3PGAREARR-RXN]] | ||
** 6 associated gene(s): | ** 6 associated gene(s): | ||
| Line 43: | Line 43: | ||
*** [[CHC_T00001241001_1]] | *** [[CHC_T00001241001_1]] | ||
** 3 reconstruction source(s) associated: | ** 3 reconstruction source(s) associated: | ||
| + | *** [[orthology-galdieria.sulphuraria]] | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
*** [[orthology-ectocarpus_siliculosus]] | *** [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
* [[GAPOXNPHOSPHN-RXN]] | * [[GAPOXNPHOSPHN-RXN]] | ||
** 2 associated gene(s): | ** 2 associated gene(s): | ||
| Line 51: | Line 51: | ||
*** [[CHC_T00009523001_1]] | *** [[CHC_T00009523001_1]] | ||
** 3 reconstruction source(s) associated: | ** 3 reconstruction source(s) associated: | ||
| + | *** [[orthology-galdieria.sulphuraria]] | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
*** [[orthology-ectocarpus_siliculosus]] | *** [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
* [[GLUCOKIN-RXN]] | * [[GLUCOKIN-RXN]] | ||
** 1 associated gene(s): | ** 1 associated gene(s): | ||
*** [[CHC_T00001373001_1]] | *** [[CHC_T00001373001_1]] | ||
** 2 reconstruction source(s) associated: | ** 2 reconstruction source(s) associated: | ||
| − | |||
*** [[orthology-galdieria.sulphuraria]] | *** [[orthology-galdieria.sulphuraria]] | ||
| + | *** [[orthology-ectocarpus_siliculosus]] | ||
* [[PEPDEPHOS-RXN]] | * [[PEPDEPHOS-RXN]] | ||
** 6 associated gene(s): | ** 6 associated gene(s): | ||
| Line 69: | Line 69: | ||
*** [[CHC_T00008530001_1]] | *** [[CHC_T00008530001_1]] | ||
** 4 reconstruction source(s) associated: | ** 4 reconstruction source(s) associated: | ||
| + | *** [[orthology-galdieria.sulphuraria]] | ||
*** [[annotation-original_genome]] | *** [[annotation-original_genome]] | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
*** [[orthology-ectocarpus_siliculosus]] | *** [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
* [[PGLUCISOM-RXN]] | * [[PGLUCISOM-RXN]] | ||
** 3 associated gene(s): | ** 3 associated gene(s): | ||
| Line 79: | Line 79: | ||
*** [[CHC_T00008268001_1]] | *** [[CHC_T00008268001_1]] | ||
** 3 reconstruction source(s) associated: | ** 3 reconstruction source(s) associated: | ||
| + | *** [[orthology-galdieria.sulphuraria]] | ||
*** [[annotation-original_genome]] | *** [[annotation-original_genome]] | ||
*** [[orthology-ectocarpus_siliculosus]] | *** [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
* [[PHOSGLYPHOS-RXN]] | * [[PHOSGLYPHOS-RXN]] | ||
** 3 associated gene(s): | ** 3 associated gene(s): | ||
| Line 88: | Line 88: | ||
*** [[CHC_T00009179001_1]] | *** [[CHC_T00009179001_1]] | ||
** 4 reconstruction source(s) associated: | ** 4 reconstruction source(s) associated: | ||
| + | *** [[orthology-galdieria.sulphuraria]] | ||
*** [[annotation-original_genome]] | *** [[annotation-original_genome]] | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
*** [[orthology-ectocarpus_siliculosus]] | *** [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
* [[RIB5PISOM-RXN]] | * [[RIB5PISOM-RXN]] | ||
** 1 associated gene(s): | ** 1 associated gene(s): | ||
*** [[CHC_T00009264001_1]] | *** [[CHC_T00009264001_1]] | ||
** 3 reconstruction source(s) associated: | ** 3 reconstruction source(s) associated: | ||
| + | *** [[orthology-galdieria.sulphuraria]] | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
*** [[orthology-ectocarpus_siliculosus]] | *** [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
* [[RIBULP3EPIM-RXN]] | * [[RIBULP3EPIM-RXN]] | ||
** 3 associated gene(s): | ** 3 associated gene(s): | ||
| − | |||
*** [[CHC_T00008270001_1]] | *** [[CHC_T00008270001_1]] | ||
*** [[CHC_T00006121001_1]] | *** [[CHC_T00006121001_1]] | ||
| + | *** [[CHC_T00008270001]] | ||
** 4 reconstruction source(s) associated: | ** 4 reconstruction source(s) associated: | ||
| + | *** [[orthology-galdieria.sulphuraria]] | ||
*** [[annotation-original_genome]] | *** [[annotation-original_genome]] | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
*** [[orthology-ectocarpus_siliculosus]] | *** [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
* [[TRANSALDOL-RXN]] | * [[TRANSALDOL-RXN]] | ||
** 1 associated gene(s): | ** 1 associated gene(s): | ||
*** [[CHC_T00000120001_1]] | *** [[CHC_T00000120001_1]] | ||
** 3 reconstruction source(s) associated: | ** 3 reconstruction source(s) associated: | ||
| + | *** [[orthology-galdieria.sulphuraria]] | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
*** [[orthology-ectocarpus_siliculosus]] | *** [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
== Reaction(s) not found == | == Reaction(s) not found == | ||
* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN] | * [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN] | ||
| Line 122: | Line 122: | ||
* [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOKETOLASE-RXN PHOSPHOKETOLASE-RXN] | * [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOKETOLASE-RXN PHOSPHOKETOLASE-RXN] | ||
== External links == | == External links == | ||
| − | |||
{{#set: common name=Bifidobacterium shunt}} | {{#set: common name=Bifidobacterium shunt}} | ||
| + | {{#set: taxonomic range=TAX-201174}} | ||
{{#set: common name=Bifidum fermentation|Bifidum pathway|fructose-6-phosphate pathway|Bifidum shunt|glucose fermentation to lactate (Bifidobacteria)}} | {{#set: common name=Bifidum fermentation|Bifidum pathway|fructose-6-phosphate pathway|Bifidum shunt|glucose fermentation to lactate (Bifidobacteria)}} | ||
{{#set: reaction found=11}} | {{#set: reaction found=11}} | ||
{{#set: total reaction=15}} | {{#set: total reaction=15}} | ||
{{#set: completion rate=73.0}} | {{#set: completion rate=73.0}} | ||
Latest revision as of 17:46, 9 January 2019
Pathway P124-PWY
- common name:
- Bifidobacterium shunt
- taxonomic range:
- Synonym(s):
- Bifidum fermentation
- Bifidum pathway
- fructose-6-phosphate pathway
- Bifidum shunt
- glucose fermentation to lactate (Bifidobacteria)
Reaction(s) found
11 reactions found over 15 reactions in the full pathway
- 1TRANSKETO-RXN
- 2 associated gene(s):
- 3 reconstruction source(s) associated:
- 2PGADEHYDRAT-RXN
- 5 associated gene(s):
- 4 reconstruction source(s) associated:
- 3PGAREARR-RXN
- 6 associated gene(s):
- 3 reconstruction source(s) associated:
- GAPOXNPHOSPHN-RXN
- 2 associated gene(s):
- 3 reconstruction source(s) associated:
- GLUCOKIN-RXN
- 1 associated gene(s):
- 2 reconstruction source(s) associated:
- PEPDEPHOS-RXN
- 6 associated gene(s):
- 4 reconstruction source(s) associated:
- PGLUCISOM-RXN
- 3 associated gene(s):
- 3 reconstruction source(s) associated:
- PHOSGLYPHOS-RXN
- 3 associated gene(s):
- 4 reconstruction source(s) associated:
- RIB5PISOM-RXN
- 1 associated gene(s):
- 3 reconstruction source(s) associated:
- RIBULP3EPIM-RXN
- 3 associated gene(s):
- 4 reconstruction source(s) associated:
- TRANSALDOL-RXN
- 1 associated gene(s):
- 3 reconstruction source(s) associated:
Reaction(s) not found
- ACETATEKIN-RXN
- FRUCTOSE-6-PHOSPHATE-PHOSPHOKETOLASE-RXN
- L-LACTATE-DEHYDROGENASE-RXN
- PHOSPHOKETOLASE-RXN
