Difference between revisions of "ACONITATEDEHYDR-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] == * direction: ** REVERSIBLE * common name: ** Aconitate...")
 
 
Line 24: Line 24:
 
*** Assignment: AUTOMATED-NAME-MATCH
 
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
 +
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-5750]], itaconate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750]
 
* [[PWY-5750]], itaconate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750]
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
** '''10''' reactions found over '''11''' reactions in the full pathway
 
** '''10''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 
−
** '''6''' reactions found over '''12''' reactions in the full pathway
 
 
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 
** '''9''' reactions found over '''10''' reactions in the full pathway
 
** '''9''' reactions found over '''10''' reactions in the full pathway
 
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 
** '''10''' reactions found over '''12''' reactions in the full pathway
 
** '''10''' reactions found over '''12''' reactions in the full pathway
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 
−
** '''8''' reactions found over '''11''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
−
** '''8''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 
−
** '''9''' reactions found over '''18''' reactions in the full pathway
 
 
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
 
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
 
** '''5''' reactions found over '''9''' reactions in the full pathway
 
** '''5''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 
−
** '''8''' reactions found over '''10''' reactions in the full pathway
 
 
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 
** '''11''' reactions found over '''11''' reactions in the full pathway
 
** '''11''' reactions found over '''11''' reactions in the full pathway
−
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
+
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
−
** '''11''' reactions found over '''16''' reactions in the full pathway
+
** '''8''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''9''' reactions found over '''19''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-galdieria.sulphuraria]]
 
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 68: Line 68:
 
* RHEA:
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10228 10228]
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10228 10228]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P16276 P16276]
 +
** [http://www.uniprot.org/uniprot/Q01059 Q01059]
 +
** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
 +
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
 +
** [http://www.uniprot.org/uniprot/P37032 P37032]
 +
** [http://www.uniprot.org/uniprot/P81291 P81291]
 +
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
 +
** [http://www.uniprot.org/uniprot/P36683 P36683]
 +
** [http://www.uniprot.org/uniprot/O53166 O53166]
 +
** [http://www.uniprot.org/uniprot/P25516 P25516]
 +
** [http://www.uniprot.org/uniprot/P09339 P09339]
 +
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
 +
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
 +
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
 +
** [http://www.uniprot.org/uniprot/P28271 P28271]
 +
** [http://www.uniprot.org/uniprot/P21399 P21399]
 +
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
 +
** [http://www.uniprot.org/uniprot/P19414 P19414]
 +
** [http://www.uniprot.org/uniprot/P20004 P20004]
 +
** [http://www.uniprot.org/uniprot/P49609 P49609]
 +
** [http://www.uniprot.org/uniprot/P74582 P74582]
 +
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
 +
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
 +
** [http://www.uniprot.org/uniprot/O04916 O04916]
 
* PIR:
 
* PIR:
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
Line 99: Line 124:
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
 
** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P16276 P16276]
 
−
** [http://www.uniprot.org/uniprot/Q01059 Q01059]
 
−
** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
 
−
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
 
−
** [http://www.uniprot.org/uniprot/P37032 P37032]
 
−
** [http://www.uniprot.org/uniprot/P81291 P81291]
 
−
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
 
−
** [http://www.uniprot.org/uniprot/P36683 P36683]
 
−
** [http://www.uniprot.org/uniprot/O53166 O53166]
 
−
** [http://www.uniprot.org/uniprot/P25516 P25516]
 
−
** [http://www.uniprot.org/uniprot/P09339 P09339]
 
−
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
 
−
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
 
−
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
 
−
** [http://www.uniprot.org/uniprot/P28271 P28271]
 
−
** [http://www.uniprot.org/uniprot/P21399 P21399]
 
−
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
 
−
** [http://www.uniprot.org/uniprot/P19414 P19414]
 
−
** [http://www.uniprot.org/uniprot/P20004 P20004]
 
−
** [http://www.uniprot.org/uniprot/P49609 P49609]
 
−
** [http://www.uniprot.org/uniprot/P74582 P74582]
 
−
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
 
−
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
 
−
** [http://www.uniprot.org/uniprot/O04916 O04916]
 
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
 
{{#set: common name=Aconitate hydratase, mitochondrial}}
 
{{#set: common name=Aconitate hydratase, mitochondrial}}
 
{{#set: gene associated=CHC_T00009087001_1|CHC_T00008781001_1|CHC_T00008781001}}
 
{{#set: gene associated=CHC_T00009087001_1|CHC_T00008781001_1|CHC_T00008781001}}
−
{{#set: in pathway=PWY-5750|PWY-5913|PWY-5690|PWY-6549|PWY-5392|TCA|P23-PWY|P105-PWY|GLYOXYLATE-BYPASS|PWY-6969|PWY-6728|REDCITCYC|PWY-7254|PWY-7124|PWY66-398|FERMENTATION-PWY}}
+
{{#set: in pathway=FERMENTATION-PWY|PWY-5690|PWY-7254|PWY-5750|GLYOXYLATE-BYPASS|P105-PWY|PWY-5913|TCA|P23-PWY|REDCITCYC|PWY66-398|PWY-6969|PWY-5392|PWY-6549|PWY-7124|PWY-6728}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-original_genome|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
+
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 18:07, 9 January 2019

Reaction ACONITATEDEHYDR-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Aconitate hydratase, mitochondrial
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 citrate[c] <=> 1 H2O[c] + 1 cis-aconitate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 11 reactions found over 16 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-5750, itaconate biosynthesis: PWY-5750
    • 3 reactions found over 4 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 4 reactions found over 6 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 9 reactions found over 10 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 10 reactions found over 12 reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
    • 5 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 8 reactions found over 12 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 9 reactions found over 19 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=ACONITATEDEHYDR-RXN&oldid=23918"