Difference between revisions of "PWY-4101"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920] == * common name: ** 6-gingerol analog biosynthesis (engineered) * Synonym(s): ==...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITRATE-DEHYDROGENASE-NAD+-RXN ISOCITRATE-DEHYDROGENASE-NAD+-RXN] == * direction: ** LEFT-TO-RIG...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITRATE-DEHYDROGENASE-NAD+-RXN ISOCITRATE-DEHYDROGENASE-NAD+-RXN] ==
 +
* direction:
 +
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 6-gingerol analog biosynthesis (engineered)
+
** Isocitrate dehydrogenase, NAD-dependent
 +
** isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial precursor
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.1.1.286 EC-1.1.1.286]
 +
** [http://enzyme.expasy.org/EC/1.1.1.41 EC-1.1.1.41]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
* '''3''' reaction(s) found
+
* With identifiers:
−
** [[RXN-12669]]
+
** 1 [[THREO-DS-ISO-CITRATE]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
−
** [[4-COUMARATE--COA-LIGASE-RXN]]
+
* With common name(s):
−
** [[R223-RXN]]
+
** 1 D-threo-isocitrate[c] '''+''' 1 NAD+[c] '''=>''' 1 2-oxoglutarate[c] '''+''' 1 NADH[c] '''+''' 1 CO2[c]
−
== Reaction(s) not found ==
+
 
−
* '''3''' reaction(s) not found
+
== Genes associated with this reaction  ==
−
** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12668 RXN-12668]
+
Genes have been associated with this reaction based on different elements listed below.
−
** [http://metacyc.org/META/NEW-IMAGE?object=RXN-14275 RXN-14275]
+
* [[CHC_T00008852001_1]]
−
** [http://metacyc.org/META/NEW-IMAGE?object=RXN-14276 RXN-14276]
+
** [[pantograph]]-[[galdieria.sulphuraria]]
 +
* [[CHC_T00009293001_1]]
 +
** [[pantograph]]-[[galdieria.sulphuraria]]
 +
* [[CHC_T00008852001]]
 +
** ORIGINAL_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[CHC_T00009293001]]
 +
** ORIGINAL_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[CHC_T00009162001]]
 +
** ORIGINAL_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[CHC_T00009162001_1]]
 +
** [[pantograph]]-[[galdieria.sulphuraria]]
 +
== Pathways  ==
 +
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[galdieria.sulphuraria]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[original_genome]]
 
== External links  ==
 
== External links  ==
−
{{#set: common name=6-gingerol analog biosynthesis (engineered)}}
+
* RHEA:
−
{{#set: reaction found=3}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23632 23632]
−
{{#set: reaction not found=3}}
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00709 R00709]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P56472 P56472]
 +
** [http://www.uniprot.org/uniprot/P41566 P41566]
 +
** [http://www.uniprot.org/uniprot/P28834 P28834]
 +
** [http://www.uniprot.org/uniprot/P41565 P41565]
 +
** [http://www.uniprot.org/uniprot/P41564 P41564]
 +
** [http://www.uniprot.org/uniprot/P50213 P50213]
 +
** [http://www.uniprot.org/uniprot/Q7M3F1 Q7M3F1]
 +
** [http://www.uniprot.org/uniprot/P41563 P41563]
 +
** [http://www.uniprot.org/uniprot/Q28479 Q28479]
 +
** [http://www.uniprot.org/uniprot/Q28480 Q28480]
 +
** [http://www.uniprot.org/uniprot/O65852 O65852]
 +
** [http://www.uniprot.org/uniprot/O65501 O65501]
 +
** [http://www.uniprot.org/uniprot/O82004 O82004]
 +
** [http://www.uniprot.org/uniprot/O43837 O43837]
 +
** [http://www.uniprot.org/uniprot/O13696 O13696]
 +
** [http://www.uniprot.org/uniprot/Q9USP8 Q9USP8]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Isocitrate dehydrogenase, NAD-dependent}}
 +
{{#set: common name=isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial precursor}}
 +
{{#set: ec number=EC-1.1.1.286}}
 +
{{#set: ec number=EC-1.1.1.41}}
 +
{{#set: gene associated=CHC_T00008852001_1|CHC_T00009293001_1|CHC_T00008852001|CHC_T00009293001|CHC_T00009162001|CHC_T00009162001_1}}
 +
{{#set: in pathway=PWY-5690|PWY66-398|PWY-6549}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=galdieria.sulphuraria}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=original_genome}}

Revision as of 10:49, 18 January 2018

Reaction ISOCITRATE-DEHYDROGENASE-NAD+-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Isocitrate dehydrogenase, NAD-dependent
    • isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial precursor
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 9 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-4101&oldid=4858"