Difference between revisions of "RXN-17127"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene CHC_T00008758001 == * left end position: ** 271036 * transcription direction: ** POSITIVE * right end position: ** 273234 * centisome position: ** 51...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: **...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene CHC_T00008758001 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] ==
−
* left end position:
+
* direction:
−
** 271036
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* ec number:
−
** POSITIVE
+
** [http://enzyme.expasy.org/EC/6.1.1.14 EC-6.1.1.14]
−
* right end position:
+
−
** 273234
+
−
* centisome position:
+
−
** 51.20766   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[DXS-RXN]]
+
* With identifiers:
−
** original_genome
+
** 1 [[GLY]][c] '''+''' 1 [[GLY-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-GLY-tRNAs]][c]
−
***automated-name-match
+
* With common name(s):
−
== Pathways associated ==
+
** 1 glycine[c] '''+''' 1 a tRNAgly[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 a glycyl-[tRNAgly][c]
−
* [[NONMEVIPP-PWY]]
+
 
−
* [[PYRIDOXSYN-PWY]]
+
== Genes associated with this reaction  ==
−
* [[PWY-6891]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[PWY-6892]]
+
* [[CHC_T00007645001_1]]
−
* [[PWY-7560]]
+
** [[pantograph]]-[[galdieria.sulphuraria]]
 +
* [[CHC_T00004794001_1]]
 +
** [[pantograph]]-[[galdieria.sulphuraria]]
 +
== Pathways ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[galdieria.sulphuraria]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[original_genome]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=271036}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16013 16013]
−
{{#set: right end position=273234}}
+
* LIGAND-RXN:
−
{{#set: centisome position=51.20766    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03654 R03654]
−
{{#set: reaction associated=DXS-RXN}}
+
* UNIPROT:
−
{{#set: pathway associated=NONMEVIPP-PWY|PYRIDOXSYN-PWY|PWY-6891|PWY-6892|PWY-7560}}
+
** [http://www.uniprot.org/uniprot/P41250 P41250]
 +
** [http://www.uniprot.org/uniprot/P54380 P54380]
 +
** [http://www.uniprot.org/uniprot/Q9ZCB1 Q9ZCB1]
 +
** [http://www.uniprot.org/uniprot/P43822 P43822]
 +
** [http://www.uniprot.org/uniprot/P54381 P54381]
 +
** [http://www.uniprot.org/uniprot/O51344 O51344]
 +
** [http://www.uniprot.org/uniprot/Q46371 Q46371]
 +
** [http://www.uniprot.org/uniprot/Q9ZCB0 Q9ZCB0]
 +
** [http://www.uniprot.org/uniprot/Q9WY59 Q9WY59]
 +
** [http://www.uniprot.org/uniprot/P43821 P43821]
 +
** [http://www.uniprot.org/uniprot/O83678 O83678]
 +
** [http://www.uniprot.org/uniprot/Q9WY60 Q9WY60]
 +
** [http://www.uniprot.org/uniprot/Q9PPK3 Q9PPK3]
 +
** [http://www.uniprot.org/uniprot/P56454 P56454]
 +
** [http://www.uniprot.org/uniprot/Q9PN63 Q9PN63]
 +
** [http://www.uniprot.org/uniprot/Q57681 Q57681]
 +
** [http://www.uniprot.org/uniprot/P67029 P67029]
 +
** [http://www.uniprot.org/uniprot/O67081 O67081]
 +
** [http://www.uniprot.org/uniprot/O67898 O67898]
 +
** [http://www.uniprot.org/uniprot/O59235 O59235]
 +
** [http://www.uniprot.org/uniprot/P47493 P47493]
 +
** [http://www.uniprot.org/uniprot/Q9ZKP1 Q9ZKP1]
 +
** [http://www.uniprot.org/uniprot/Q9JW67 Q9JW67]
 +
** [http://www.uniprot.org/uniprot/P56453 P56453]
 +
** [http://www.uniprot.org/uniprot/O27874 O27874]
 +
** [http://www.uniprot.org/uniprot/Q9ZKM9 Q9ZKM9]
 +
** [http://www.uniprot.org/uniprot/Q9CGK0 Q9CGK0]
 +
** [http://www.uniprot.org/uniprot/P38088 P38088]
 +
** [http://www.uniprot.org/uniprot/Q06817 Q06817]
 +
** [http://www.uniprot.org/uniprot/Q51114 Q51114]
 +
** [http://www.uniprot.org/uniprot/P75425 P75425]
 +
** [http://www.uniprot.org/uniprot/Q55716 Q55716]
 +
** [http://www.uniprot.org/uniprot/P00960 P00960]
 +
** [http://www.uniprot.org/uniprot/P00961 P00961]
 +
** [http://www.uniprot.org/uniprot/Q8L785 Q8L785]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-6.1.1.14}}
 +
{{#set: gene associated=CHC_T00007645001_1|CHC_T00004794001_1}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=galdieria.sulphuraria}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=original_genome}}

Revision as of 11:50, 18 January 2018

Reaction GLYCINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 glycine[c] + 1 a tRNAgly[c] + 1 ATP[c] => 1 diphosphate[c] + 1 AMP[c] + 1 a glycyl-[tRNAgly][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-17127&oldid=5020"