Difference between revisions of "CPD-14424"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THI-P-SYN-RXN THI-P-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] == * direction: ** LEFT-TO-RIG...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THI-P-SYN-RXN THI-P-SYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.3 EC-2.5.1.3]
+
** [http://enzyme.expasy.org/EC/5.4.99.12 EC-5.4.99.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THZ-P]][c] '''=>''' 1 [[THIAMINE-P]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[tRNA-uridine-38-40]][c] '''=>''' 1 [[tRNA-pseudouridine-38-40]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''+''' 1 H+[c] '''+''' 1 4-methyl-5-(2-phosphooxyethyl)thiazole[c] '''=>''' 1 thiamine phosphate[c] '''+''' 1 diphosphate[c]
+
** 1 a uridine38-40 in tRNA[c] '''=>''' 1 a pseudouridine38-40 in tRNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00006435001_1]]
+
* [[CHC_T00004120001_1]]
 +
** [[pantograph]]-[[galdieria.sulphuraria]]
 +
* [[CHC_T00006828001_1]]
 +
** [[pantograph]]-[[galdieria.sulphuraria]]
 +
* [[CHC_T00006204001_1]]
 +
** [[pantograph]]-[[galdieria.sulphuraria]]
 +
* [[CHC_T00006579001_1]]
 +
** [[pantograph]]-[[galdieria.sulphuraria]]
 +
* [[CHC_T00007304001_1]]
 +
** [[pantograph]]-[[galdieria.sulphuraria]]
 +
* [[CHC_T00001139001_1]]
 +
** [[pantograph]]-[[galdieria.sulphuraria]]
 +
* [[CHC_T00001402001_1]]
 
** [[pantograph]]-[[galdieria.sulphuraria]]
 
** [[pantograph]]-[[galdieria.sulphuraria]]
−
* [[CHC_T00006163001_1]]
 
−
** [[pantograph]]-[[a.taliana]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6897]], thiamine salvage II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6897 PWY-6897]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6908]], thiamine diphosphate biosynthesis IV (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6908 PWY-6908]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 
*** [[galdieria.sulphuraria]]
 
*** [[galdieria.sulphuraria]]
−
*** [[a.taliana]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22328 22328]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03223 R03223]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03020 R03020]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P41835 P41835]
+
** [http://www.uniprot.org/uniprot/Q59069 Q59069]
−
** [http://www.uniprot.org/uniprot/P71350 P71350]
+
** [http://www.uniprot.org/uniprot/P47428 P47428]
−
** [http://www.uniprot.org/uniprot/O25514 O25514]
+
** [http://www.uniprot.org/uniprot/P45291 P45291]
−
** [http://www.uniprot.org/uniprot/Q9PNL3 Q9PNL3]
+
** [http://www.uniprot.org/uniprot/Q45557 Q45557]
−
** [http://www.uniprot.org/uniprot/Q9JWI2 Q9JWI2]
+
** [http://www.uniprot.org/uniprot/Q50291 Q50291]
−
** [http://www.uniprot.org/uniprot/Q9ZL01 Q9ZL01]
+
** [http://www.uniprot.org/uniprot/P53167 P53167]
−
** [http://www.uniprot.org/uniprot/P30137 P30137]
+
** [http://www.uniprot.org/uniprot/Q12211 Q12211]
−
** [http://www.uniprot.org/uniprot/P39594 P39594]
+
** [http://www.uniprot.org/uniprot/P73295 P73295]
−
** [http://www.uniprot.org/uniprot/P40386 P40386]
+
** [http://www.uniprot.org/uniprot/P07649 P07649]
−
** [http://www.uniprot.org/uniprot/P72965 P72965]
+
−
** [http://www.uniprot.org/uniprot/O48881 O48881]
+
−
** [http://www.uniprot.org/uniprot/O34294 O34294]
+
−
** [http://www.uniprot.org/uniprot/Q9ZBL5 Q9ZBL5]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.5.1.3}}
+
{{#set: ec number=EC-5.4.99.12}}
−
{{#set: gene associated=CHC_T00006435001_1|CHC_T00006163001_1}}
+
{{#set: gene associated=CHC_T00004120001_1|CHC_T00006828001_1|CHC_T00006204001_1|CHC_T00006579001_1|CHC_T00007304001_1|CHC_T00001139001_1|CHC_T00001402001_1}}
−
{{#set: in pathway=PWY-6897|PWY-7356|PWY-6908|PWY-7357}}
+
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
+
{{#set: reconstruction source=galdieria.sulphuraria}}

Revision as of 11:12, 18 January 2018

Reaction TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




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