DIAMINOPIMDECARB-RXN

Reaction DIAMINOPIMDECARB-RXN

• direction:
  • LEFT-TO-RIGHT
• common name:
  • PLP-binding barrel
• ec number:
  • EC-4.1.1.20
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 MESO-DIAMINOPIMELATE[c] + 1 PROTON[c] => 1 LYS[c] + 1 CARBON-DIOXIDE[c]
• With common name(s):
  • 1 meso-diaminopimelate[c] + 1 H+[c] => 1 L-lysine[c] + 1 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: Ec-01_000060
  • Source: annotation-esiliculosus_genome
    • Assignment: EC-NUMBER
• Gene: Ec-09_002360
  • Source: orthology-aragem
• Gene: Ec-09_002410
  • Source: orthology-aragem
• Gene: Ec-09_002420
  • Source: orthology-aragem

Pathways

• PWY-5097, L-lysine biosynthesis VI: PWY-5097
  • 7 reactions found over 7 reactions in the full pathway
• PWY-2942, L-lysine biosynthesis III: PWY-2942
  • 6 reactions found over 7 reactions in the full pathway
• DAPLYSINESYN-PWY, L-lysine biosynthesis I: DAPLYSINESYN-PWY
  • 9 reactions found over 9 reactions in the full pathway
• PWY-2941, L-lysine biosynthesis II: PWY-2941
  • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

• Category: orthology
  • Source: orthology-aragem
    • Tool: pantograph
• Category: manual
  • Source: manual-erythro
  • Source: manual-sphingo361
  • Source: manual-sphingo391
  • Source: manual-hoflea
  • Source: manual-rhizobi
  • Source: manual-roseov420
  • Source: manual-imperaili
  • Source: manual-roseov134
  • Source: manual-marino
  • Source: manual-bosea
• Category: annotation
  • Source: annotation-esiliculosus_genome
    • Tool: pathwaytools

External links

• RHEA:
  • 15101
• LIGAND-RXN:
  • R00451
• UNIPROT:
  • P19572
  • P0A5M4
  • P44316
  • P56129
  • O67262
  • Q9JWA6
  • Q9CG26
  • P00861
  • O27390
  • Q9PII5
  • Q58497
  • O29458
  • P41023
  • P23630
  • P09890
  • Q55484
  • O05321