Difference between revisions of "Ec-21 004360"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-115 RXN-115] == * direction: ** LEFT-TO-RIGHT * common name: ** Non-haem dioxygenase N-terminal...")
(Created page with "Category:Gene == Gene Ec-21_004360 == * left end position: ** 5344511 * transcription direction: ** POSITIVE * right end position: ** 5353798 * centisome position: ** 72.4...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-115 RXN-115] ==
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== Gene Ec-21_004360 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 5344511
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* common name:
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* transcription direction:
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** Non-haem dioxygenase N-terminal domain
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/1.14.11.13 EC-1.14.11.13]
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** 5353798
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* centisome position:
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** 72.41768   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0131_0082
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** Esi0131_0082
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** HMGS1
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN]]
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** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD1F-139]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-204]][c] '''+''' 1 [[SUC]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''+''' 1 gibberellin A1[c] '''=>''' 1 CO2[c] '''+''' 1 gibberellin A8[c] '''+''' 1 succinate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-08_003510]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-19_002750]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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** [[pantograph]]-[[aragem]]
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* [[Ec-19_002760]]
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[PWY-102]], gibberellin inactivation I (2β-hydroxylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-102 PWY-102]
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** '''4''' reactions found over '''11''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
 
** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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== Pathways associated ==
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* Category: [[annotation]]
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* [[PWY66-367]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[PWY-6174]]
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*** Tool: [[pathwaytools]]
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* [[PWY-922]]
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* [[PWY-7391]]
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* [[PWY-7571]]
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* [[PWY-7524]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=5344511}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15005 15005]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=5353798}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03008 R03008]
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{{#set: centisome position=72.41768    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Esi_0131_0082|Esi0131_0082|HMGS1}}
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{{#set: common name=Non-haem dioxygenase N-terminal domain}}
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{{#set: reaction associated=HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN}}
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{{#set: ec number=EC-1.14.11.13}}
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{{#set: pathway associated=PWY66-367|PWY-6174|PWY-922|PWY-7391|PWY-7571|PWY-7524}}
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{{#set: gene associated=Ec-08_003510|Ec-19_002750|Ec-19_002760}}
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{{#set: in pathway=PWY-102}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:41, 21 March 2018

Gene Ec-21_004360

  • left end position:
    • 5344511
  • transcription direction:
    • POSITIVE
  • right end position:
    • 5353798
  • centisome position:
    • 72.41768
  • Synonym(s):
    • Esi_0131_0082
    • Esi0131_0082
    • HMGS1

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-21_004360&oldid=28708"