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| Line 1: |
Line 1: |
| − | [[Category:Pathway]] | + | [[Category:Metabolite]] |
| − | == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00020 map00020] == | + | == Metabolite [http://bigg.ucsd.edu/universal/metabolites/co2 co2] == |
| − | * common_name: | + | * common name: |
| − | ** Citrate cycle (TCA cycle) | + | ** CO2 CO2 |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction(s) found == | + | == Reaction(s) known to consume the compound == |
| − | '''4''' reactions found over '''70''' reactions in the full pathway
| + | * [[AIRC1]] |
| − | * [[ACONTa]] | + | * [[EX_co2]] |
| − | ** 0 associated gene: | + | == Reaction(s) known to produce the compound == |
| − | ** 1 reconstruction source(s) associated:
| + | * [[CPPPGO]] |
| − | *** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]] | + | * [[GND]] |
| − | * [[MDH]] | + | * [[OIVD2]] |
| − | ** 3 associated gene(s): | + | * [[3OAS140]] |
| − | *** [[EF0641]] | + | * [[PPCDC]] |
| − | *** [[EF0255]] | + | * [[CSPMDDC]] |
| − | *** [[EF0388]] | + | * [[MCMAT4_manual]] |
| − | ** 2 reconstruction source(s) associated: | + | * [[DXPS]] |
| − | *** [[orthology-e_coli_sstr_k12_substr_mg1655]] | + | * [[ME1]] |
| − | *** [[orthology-l_plantarum_wcfs1]] | + | * [[DPMVD]] |
| − | * [[PC]] | + | * [[ME2]] |
| − | ** 1 associated gene(s): | + | * [[GLUDC]] |
| − | *** [[EF2456]] | + | * [[TYRCBOX]] |
| − | ** 2 reconstruction source(s) associated: | + | * [[FAS100]] |
| − | *** [[orthology-b_subtilis_subsp_subtilis_str168]] | + | * [[ADMDC]] |
| − | *** [[orthology-l_plantarum_wcfs1]] | + | * [[PPNDH]] |
| | + | * [[POX]] |
| | + | * [[OAADC]] |
| | + | * [[FAS120]] |
| | + | * [[KAS2]] |
| | + | * [[OIVD3]] |
| | + | * [[KG6PDC]] |
| | + | * [[OGMEACPS]] |
| | + | * [[PPND]] |
| | + | * [[ORNDC]] |
| | + | * [[FAS140]] |
| | + | * [[FAS80_L]] |
| | + | * [[KAS15]] |
| | + | * [[KAS14]] |
| | + | * [[KAS17]] |
| | + | * [[OXGDC]] |
| | + | * [[KAS13]] |
| | + | * [[3OAS100]] |
| | + | * [[3OAS80]] |
| | + | * [[3OAS160]] |
| | * [[PDH]] | | * [[PDH]] |
| − | ** 4 associated gene(s):
| + | * [[ACHBS]] |
| − | *** [[EF1353]]
| + | * [[3OAS120]] |
| − | *** [[EF1356]]
| + | * [[3OAS60]] |
| − | *** [[EF1355]]
| + | * [[ASP1DC]] |
| − | *** [[EF1354]]
| + | * [[DAPDC]] |
| − | ** 2 reconstruction source(s) associated:
| + | * [[ACLDC]] |
| − | *** [[orthology-b_subtilis_subsp_subtilis_str168]]
| + | * [[GLXCL]] |
| − | *** [[orthology-l_plantarum_wcfs1]]
| + | * [[MCMAT7_manual]] |
| − | == Reaction(s) not found ==
| + | * [[ALLTAMH]] |
| − | * [http://bigg.ucsd.edu/universal/reactions/2OXOADOXm 2OXOADOXm] | + | * [[MCMAT8_manual]] |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACITL ACITL]
| + | * [[ACLS]] |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACONT ACONT]
| + | * [[3OAS180]] |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACONTb ACONTb] | + | * [[3OAS181]] |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACONTm ACONTm]
| + | * [[OMPDC]] |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACONTx ACONTx]
| + | * [[DHNAOT4]] |
| − | * [http://bigg.ucsd.edu/universal/reactions/AKGDH AKGDH] | + | * [[DHNAOT7]] |
| − | * [http://bigg.ucsd.edu/universal/reactions/AKGDHe2r AKGDHe2r]
| + | * [[SEPHCHCS]] |
| − | * [http://bigg.ucsd.edu/universal/reactions/AKGDa AKGDa]
| + | == Reaction(s) of unknown directionality == |
| − | * [http://bigg.ucsd.edu/universal/reactions/AKGDam AKGDam] | + | * [[AIRCr]] |
| − | * [http://bigg.ucsd.edu/universal/reactions/AKGDb AKGDb]
| + | * [[CO2t]] |
| − | * [http://bigg.ucsd.edu/universal/reactions/AKGDbm AKGDbm]
| + | * [[OIVD1r]] |
| − | * [http://bigg.ucsd.edu/universal/reactions/AKGDm AKGDm] | + | * [[2S6HCCi]] |
| − | * [http://bigg.ucsd.edu/universal/reactions/CS CS]
| + | * [[CBMKr]] |
| − | * [http://bigg.ucsd.edu/universal/reactions/CSm CSm]
| + | * [[HCO3E]] |
| − | * [http://bigg.ucsd.edu/universal/reactions/CSp CSp] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/DMALRED DMALRED]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/FRD FRD]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/FRDcm FRDcm] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/FRDm FRDm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/FUM FUM]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/FUMm FUMm] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/GCC2cm GCC2cm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/GCCc GCCc]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/GCCcm GCCcm] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/GLCOASYNT GLCOASYNT]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ICDHhr ICDHhr]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ICDHx ICDHx] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ICDHxm ICDHxm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ICDHym ICDHym]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ICDHyp ICDHyp] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ICDHyr ICDHyr]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ITCOAL1m ITCOAL1m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ITCOALm ITCOALm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MOX MOX]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/OXOADLR OXOADLR] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PCm PCm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PDHa PDHa]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PDHam1hi PDHam1hi] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PDHam1mi PDHam1mi]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PDHam2hi PDHam2hi]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PDHam2mi PDHam2mi] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PDHbr PDHbr]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PDHcr PDHcr]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PDHe2hr PDHe2hr] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PDHe2r PDHe2r]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PDHe3hr PDHe3hr]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PDHm PDHm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PEPCKm PEPCKm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PPCK PPCK]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PPCKm PPCKm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/SUCD1 SUCD1]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/SUCD1m SUCD1m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/SUCD2_u6m SUCD2_u6m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/SUCD3_u6m SUCD3_u6m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/SUCDHh SUCDHh]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/SUCLm SUCLm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/SUCOAACTr SUCOAACTr]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/SUCOAS SUCOAS]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/SUCOAS1m SUCOAS1m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/SUCOASm SUCOASm]
| + | |
| | == External links == | | == External links == |
| − | {{#set: common_name=Citrate cycle (TCA cycle)}} | + | {{#set: common name=CO2 CO2}} |
| − | {{#set: reaction found=4}} | + | {{#set: consumed by=AIRC1|EX_co2}} |
| − | {{#set: total reaction=70}} | + | {{#set: produced by=CPPPGO|GND|OIVD2|3OAS140|PPCDC|CSPMDDC|MCMAT4_manual|DXPS|ME1|DPMVD|ME2|GLUDC|TYRCBOX|FAS100|ADMDC|PPNDH|POX|OAADC|FAS120|KAS2|OIVD3|KG6PDC|OGMEACPS|PPND|ORNDC|FAS140|FAS80_L|KAS15|KAS14|KAS17|OXGDC|KAS13|3OAS100|3OAS80|3OAS160|PDH|ACHBS|3OAS120|3OAS60|ASP1DC|DAPDC|ACLDC|GLXCL|MCMAT7_manual|ALLTAMH|MCMAT8_manual|ACLS|3OAS180|3OAS181|OMPDC|DHNAOT4|DHNAOT7|SEPHCHCS}} |
| − | {{#set: completion rate=6.0}} | + | {{#set: reversible reaction associated=AIRCr|CO2t|OIVD1r|2S6HCCi|CBMKr|HCO3E}} |
