Difference between revisions of "D-LACTALDEHYDE-DEHYDROGENASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUC1PURIDYLTRANS-RXN GLUC1PURIDYLTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** utp--g...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SUC SUC] == * smiles: ** C(C([O-])=O)CC([O-])=O * common name: ** succinate * inchi key: ** InC...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUC1PURIDYLTRANS-RXN GLUC1PURIDYLTRANS-RXN] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SUC SUC] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** C(C([O-])=O)CC([O-])=O
 
* common name:
 
* common name:
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** utp--glucose-1-phosphate_uridylyltransferase
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** succinate
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** dp-n-acetylglucosamine_pyrophosphorylase
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* inchi key:
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** f-box_lrr-repeat_protein_13-like
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** InChIKey=KDYFGRWQOYBRFD-UHFFFAOYSA-L
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/2.7.7.64 EC-2.7.7.64]
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** 116.073   
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** [http://enzyme.expasy.org/EC/2.7.7.9 EC-2.7.7.9]
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* Synonym(s):
 
* Synonym(s):
 +
** succinic acid
 +
** suc
 +
** succ
 +
** butanedioic acid
 +
** ethylenesuccinic acid
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
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** 1 [[UTP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[GLC-1-P]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-12575]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[RXN1F-165]]
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** 1 UTP[c] '''+''' 1 H+[c] '''+''' 1 &alpha;-D-glucopyranose 1-phosphate[c] '''<=>''' 1 diphosphate[c] '''+''' 1 UDP-&alpha;-D-glucose[c]
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* [[RXN0-299]]
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* [[SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
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== Genes associated with this reaction  ==
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* [[RXN-7648]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[SUCHMSSELCYSL]]
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* [[Tiso_gene_6459]]
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* [[SUCCSEMIALDDEHYDROG-RXN]]
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** IN-SILICO_ANNOTATION
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* [[RXN-527]]
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***EC-NUMBER
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* [[RXN-113]]
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* [[Tiso_gene_5879]]
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* [[RXN490-3641]]
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** IN-SILICO_ANNOTATION
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* [[RXN-115]]
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***AUTOMATED-NAME-MATCH
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* [[SUCHMSSELCYSLh]]
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* [[Tiso_gene_17566]]
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* [[RXN-171]]
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** IN-SILICO_ANNOTATION
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* [[RXN-8450]]
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***EC-NUMBER
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* [[RXN1F-168]]
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** EXPERIMENTAL_ANNOTATION
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* [[NARINGENIN-3-DIOXYGENASE-RXN]]
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***EC-NUMBER
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* [[SSNOm]]
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** [[pantograph]]-[[athaliana]]
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* [[1.14.11.2-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-7785]]
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* [[Tiso_gene_16930]]
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* [[LEUCPEL-RXN]]
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** IN-SILICO_ANNOTATION
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* [[RXN66-470]]
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***AUTOMATED-NAME-MATCH
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* [[RXN-7922]]
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* [[Tiso_gene_14796]]
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* [[1.14.11.19-RXN]]
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** IN-SILICO_ANNOTATION
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* [[RXN-602]]
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***EC-NUMBER
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* [[RXN1F-167]]
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** EXPERIMENTAL_ANNOTATION
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* [[METBALT-RXN]]
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***EC-NUMBER
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* [[PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN]]
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** [[pantograph]]-[[athaliana]]
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* [[RXN1F-93]]
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* [[Tiso_gene_9110]]
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* [[RXN-9929]]
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** IN-SILICO_ANNOTATION
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* [[RXN1F-169]]
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***EC-NUMBER
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* [[RXN-6550]]
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** EXPERIMENTAL_ANNOTATION
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* [[1.14.11.18-RXN]]
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***EC-NUMBER
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* [[RXN-7775]]
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** [[pantograph]]-[[athaliana]]
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* [[RXN1F-162]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN1F-163]]
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* [[Tiso_gene_17531]]
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== Reaction(s) of unknown directionality ==
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** IN-SILICO_ANNOTATION
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* [[3-OXOACID-COA-TRANSFERASE-RXN]]
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***EC-NUMBER
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* [[FUMARATE-REDUCTASE-NADH-RXN]]
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* [[Tiso_gene_4816]]
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* [[SUCL_gdp_m]]
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** [[pantograph]]-[[esiliculosus]]
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* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
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* [[Tiso_gene_7102]]
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* [[O-SUCCHOMOSERLYASE-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-9384]]
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* [[Tiso_gene_13477]]
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* [[RXNI-2]]
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** [[pantograph]]-[[esiliculosus]]
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* [[ISOCIT-CLEAV-RXN]]
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* [[Tiso_gene_7440]]
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* [[SUCCCOASYN-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_11401]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6457]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6458]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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−
* [[PWY-7343]], UDP-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7343 PWY-7343]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-3801]], sucrose degradation II (sucrose synthase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3801 PWY-3801]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7817 PWY-7817]
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** '''7''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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−
== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 110-15-6
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19889 19889]
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* BIGG : succ
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* PIR:
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* PUBCHEM:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A40650 A40650]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=160419 160419]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41382 A41382]
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* KNAPSACK : C00001205
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A56146 A56146]
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* HMDB : HMDB00254
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64250 A64250]
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* LIGAND-CPD:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64970 A64970]
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** [http://www.genome.jp/dbget-bin/www_bget?C00042 C00042]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A75096 A75096]
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* CHEMSPIDER:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D49349 D49349]
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** [http://www.chemspider.com/Chemical-Structure.140973.html 140973]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69184 D69184]
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* CHEBI:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D70601 D70601]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=30031 30031]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64466 E64466]
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* METABOLIGHTS : MTBLC30031
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E71913 E71913]
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{{#set: smiles=C(C([O-])=O)CC([O-])=O}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F59102 F59102]
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{{#set: common name=succinate}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64600 F64600]
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{{#set: inchi key=InChIKey=KDYFGRWQOYBRFD-UHFFFAOYSA-L}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F81300 F81300]
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{{#set: molecular weight=116.073    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64095 G64095]
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{{#set: common name=succinic acid|suc|succ|butanedioic acid|ethylenesuccinic acid}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G70125 G70125]
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{{#set: consumed by=SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70446 H70446]
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{{#set: produced by=RXN1F-165|RXN0-299|SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN|RXN-7648|SUCHMSSELCYSL|SUCCSEMIALDDEHYDROG-RXN|RXN-527|RXN-113|RXN490-3641|RXN-115|SUCHMSSELCYSLh|RXN-171|RXN-8450|RXN1F-168|NARINGENIN-3-DIOXYGENASE-RXN|SSNOm|1.14.11.2-RXN|RXN-7785|LEUCPEL-RXN|RXN66-470|RXN-7922|1.14.11.19-RXN|RXN-602|RXN1F-167|METBALT-RXN|PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN|RXN1F-93|RXN-9929|RXN1F-169|RXN-6550|1.14.11.18-RXN|RXN-7775|RXN1F-162|RXN1F-163}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC2265 JC2265]
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{{#set: reversible reaction associated=3-OXOACID-COA-TRANSFERASE-RXN|FUMARATE-REDUCTASE-NADH-RXN|SUCL_gdp_m|SUCCINATE--COA-LIGASE-GDP-FORMING-RXN|O-SUCCHOMOSERLYASE-RXN|RXN-9384|RXNI-2|ISOCIT-CLEAV-RXN|SUCCCOASYN-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4785 JC4785]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4985 JC4985]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0277 JX0277]
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−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15298 S15298]
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−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S30007 S30007]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S31431 S31431]
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−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S35692 S35692]
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−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41533 S41533]
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−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62599 S62599]
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−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S73501 S73501]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78541 S78541]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T42521 T42521]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44841 T44841]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45453 T45453]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XNDOU XNDOU]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XNPOU XNPOU]
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−
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00289 R00289]
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−
* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q05852 Q05852]
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−
** [http://www.uniprot.org/uniprot/P27897 P27897]
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** [http://www.uniprot.org/uniprot/Q48447 Q48447]
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** [http://www.uniprot.org/uniprot/P47691 P47691]
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** [http://www.uniprot.org/uniprot/P0AAB6 P0AAB6]
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** [http://www.uniprot.org/uniprot/Q9UZI7 Q9UZI7]
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** [http://www.uniprot.org/uniprot/P33696 P33696]
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** [http://www.uniprot.org/uniprot/O26731 O26731]
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** [http://www.uniprot.org/uniprot/O05576 O05576]
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** [http://www.uniprot.org/uniprot/Q58730 Q58730]
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** [http://www.uniprot.org/uniprot/Q9ZLI8 Q9ZLI8]
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** [http://www.uniprot.org/uniprot/Q9X364 Q9X364]
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** [http://www.uniprot.org/uniprot/O25363 O25363]
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** [http://www.uniprot.org/uniprot/Q9PMD3 Q9PMD3]
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** [http://www.uniprot.org/uniprot/P44878 P44878]
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** [http://www.uniprot.org/uniprot/O51225 O51225]
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** [http://www.uniprot.org/uniprot/O67602 O67602]
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** [http://www.uniprot.org/uniprot/P0AEP3 P0AEP3]
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−
** [http://www.uniprot.org/uniprot/Q43772 Q43772]
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** [http://www.uniprot.org/uniprot/P74969 P74969]
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** [http://www.uniprot.org/uniprot/Q07130 Q07130]
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−
** [http://www.uniprot.org/uniprot/P32861 P32861]
+
−
** [http://www.uniprot.org/uniprot/P19595 P19595]
+
−
** [http://www.uniprot.org/uniprot/Q07131 Q07131]
+
−
** [http://www.uniprot.org/uniprot/P37776 P37776]
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−
** [http://www.uniprot.org/uniprot/P75124 P75124]
+
−
** [http://www.uniprot.org/uniprot/Q46768 Q46768]
+
−
** [http://www.uniprot.org/uniprot/P78811 P78811]
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** [http://www.uniprot.org/uniprot/Q9RMC3 Q9RMC3]
+
−
** [http://www.uniprot.org/uniprot/Q9Z5G1 Q9Z5G1]
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−
** [http://www.uniprot.org/uniprot/P08800 P08800]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=utp--glucose-1-phosphate_uridylyltransferase}}
+
−
{{#set: common name=dp-n-acetylglucosamine_pyrophosphorylase}}
+
−
{{#set: common name=f-box_lrr-repeat_protein_13-like}}
+
−
{{#set: ec number=EC-2.7.7.64}}
+
−
{{#set: ec number=EC-2.7.7.9}}
+
−
{{#set: gene associated=Tiso_gene_6459|Tiso_gene_5879|Tiso_gene_17566|Tiso_gene_16930|Tiso_gene_14796|Tiso_gene_9110|Tiso_gene_17531|Tiso_gene_4816|Tiso_gene_7102|Tiso_gene_13477|Tiso_gene_7440|Tiso_gene_11401|Tiso_gene_6457|Tiso_gene_6458}}
+
−
{{#set: in pathway=PWY-7343|PWY-3801|PWY-7817|PWY-6527|PWY-7238}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 15:54, 21 March 2018

Metabolite SUC

  • smiles:
    • C(C([O-])=O)CC([O-])=O
  • common name:
    • succinate
  • inchi key:
    • InChIKey=KDYFGRWQOYBRFD-UHFFFAOYSA-L
  • molecular weight:
    • 116.073
  • Synonym(s):
    • succinic acid
    • suc
    • succ
    • butanedioic acid
    • ethylenesuccinic acid

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 110-15-6
  • BIGG : succ
  • PUBCHEM:
  • KNAPSACK : C00001205
  • HMDB : HMDB00254
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC30031
"C(C([O-])=O)CC([O-])=O" cannot be used as a page name in this wiki.




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