Difference between revisions of "LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERINE-O-ACETYLTRANSFERASE-RXN HOMOSERINE-O-ACETYLTRANSFERASE-RXN] == * direction: ** REVERSIBL...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-11...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERINE-O-ACETYLTRANSFERASE-RXN HOMOSERINE-O-ACETYLTRANSFERASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3035 TAX-3035]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
 
* common name:
 
* common name:
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** related_to_met2-homoserine_o-acetyltransferase
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** TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.31 EC-2.3.1.31]
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* Synonym(s):
 
* Synonym(s):
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** citric acid cycle
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** tricarboxylic acid cycle
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** Szent-Gyorgyi-Krebs cycle
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** Krebs cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''9''' reactions found over '''12''' reactions in the full pathway
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** 1 [[ACETYL-COA]][c] '''+''' 1 [[HOMO-SER]][c] '''<=>''' 1 [[CPD-667]][c] '''+''' 1 [[CO-A]][c]
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* [[ACONITATEDEHYDR-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 acetyl-CoA[c] '''+''' 1 L-homoserine[c] '''<=>''' 1 O-acetyl-L-homoserine[c] '''+''' 1 coenzyme A[c]
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*** [[Tiso_gene_13007]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_5558]]
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*** [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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* [[ACONITATEHYDR-RXN]]
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***EC-NUMBER
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** 1 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_13007]]
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* [[PWY-5344]], L-homocysteine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5344 PWY-5344]
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** 2 reconstruction source(s) associated:
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** '''2''' reactions found over '''2''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** [[annotation-experimental_annotation]]
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* Category: [[annotation]]
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* [[CITSYN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 4 associated gene(s):
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_18030]]
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*** [[Tiso_gene_9601]]
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*** [[Tiso_gene_9603]]
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*** [[Tiso_gene_9602]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_3691]]
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*** [[Tiso_gene_6720]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ISOCIT-CLEAV-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_14008]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[ISOCITDEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_18262]]
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*** [[Tiso_gene_10809]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_2323]]
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*** [[Tiso_gene_1990]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[MALSYN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_14377]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_15846]]
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*** [[Tiso_gene_11866]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOGLUTARATE-SYNTHASE-RXN 2-OXOGLUTARATE-SYNTHASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12912 RXN-12912]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-1117}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13701 13701]
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{{#set: taxonomic range=TAX-3035}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-1224}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01776 R01776]
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{{#set: taxonomic range=TAX-201174}}
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* UNIPROT:
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{{#set: common name=TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)}}
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** [http://www.uniprot.org/uniprot/P08465 P08465]
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{{#set: common name=citric acid cycle|tricarboxylic acid cycle|Szent-Gyorgyi-Krebs cycle|Krebs cycle}}
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** [http://www.uniprot.org/uniprot/O60062 O60062]
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{{#set: reaction found=9}}
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** [http://www.uniprot.org/uniprot/P94891 P94891]
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{{#set: total reaction=12}}
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** [http://www.uniprot.org/uniprot/P12917 P12917]
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{{#set: completion rate=75.0}}
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=related_to_met2-homoserine_o-acetyltransferase}}
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{{#set: ec number=EC-2.3.1.31}}
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−
{{#set: gene associated=Tiso_gene_5558}}
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{{#set: in pathway=PWY-5344}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 16:11, 21 March 2018

Pathway PWY-6969

  • taxonomic range:
  • common name:
    • TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
  • Synonym(s):
    • citric acid cycle
    • tricarboxylic acid cycle
    • Szent-Gyorgyi-Krebs cycle
    • Krebs cycle

Reaction(s) found

9 reactions found over 12 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN&oldid=32756"