Difference between revisions of "RXN-9655"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENTDB-RXN ENTDB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 4_-phosphopantetheinyl_tran...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENTDB-RXN ENTDB-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 4_-phosphopantetheinyl_transferase
+
** polyketide_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.8.7 EC-2.7.8.7]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
 +
** (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
 +
** β-hydroxyacyl-ACP dehydrase
 +
** HDDase
 +
** β-hydroxyacyl-acyl carrier protein dehydratase
 +
** FabA
 +
** β-hydroxydecanoyl thiol ester dehydrase
 +
** β-hydroxydecanoate dehydrase
 +
** D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Apo-EntB]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Holo-EntB]][c]
+
** 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Trans-D2-decenoyl-ACPs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an apo-[EntB isochorismatase/aryl-carrier protein][c] '''+''' 1 coenzyme A[c] '''=>''' 1 adenosine 3',5'-bisphosphate[c] '''+''' 1 H+[c] '''+''' 1 a holo-[EntB isochorismatase/aryl-carrier protein][c]
+
** 1 a (3R)-3-hydroxydecanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a (2E)-dec-2-enoyl-[acp][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14278]]
+
* Gene: [[Tiso_gene_10876]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6884]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[ENTBACSYN-PWY]], enterobactin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ENTBACSYN-PWY ENTBACSYN-PWY]
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
** '''3''' reactions found over '''10''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY0-862]], (5Z)-dodec-5-enoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[manual]]
−
** [[pathwaytools]]:
+
** Source: [[manual-primary_network]]
−
*** [[in-silico_annotation]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=4_-phosphopantetheinyl_transferase}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: ec number=EC-2.7.8.7}}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: gene associated=Tiso_gene_14278}}
+
{{#set: ec number=EC-2.3.1.85}}
−
{{#set: in pathway=ENTBACSYN-PWY}}
+
{{#set: ec number=EC-4.2.1.59}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: common name=(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase|β-hydroxyacyl-ACP dehydrase|HDDase|β-hydroxyacyl-acyl carrier protein dehydratase|FabA|β-hydroxydecanoyl thiol ester dehydrase|β-hydroxydecanoate dehydrase|D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase}}
 +
{{#set: gene associated=Tiso_gene_10876|Tiso_gene_136|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_135|Tiso_gene_6884}}
 +
{{#set: in pathway=PWY-5971|PWY-5994|PWY0-862}}
 +
{{#set: reconstruction category=manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Latest revision as of 19:49, 21 March 2018

Reaction RXN-9655

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
  • ec number:
  • Synonym(s):
    • (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
    • β-hydroxyacyl-ACP dehydrase
    • HDDase
    • β-hydroxyacyl-acyl carrier protein dehydratase
    • FabA
    • β-hydroxydecanoyl thiol ester dehydrase
    • β-hydroxydecanoate dehydrase
    • D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway
  • PWY0-862, (5Z)-dodec-5-enoate biosynthesis: PWY0-862
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • "(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase" cannot be used as a page name in this wiki.
  • "D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase" cannot be used as a page name in this wiki.



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