Difference between revisions of "THREO-DS-ISO-CITRATE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8635 RXN-8635] == * direction: ** LEFT-TO-RIGHT * common name: ** ascorbate_peroxidase ** ORF *...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=THREO-DS-ISO-CITRATE THREO-DS-ISO-CITRATE] == * smiles: ** C(=O)(C(CC([O-])=O)C(O)C([O-])=O)[O-...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8635 RXN-8635] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=THREO-DS-ISO-CITRATE THREO-DS-ISO-CITRATE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C(=O)(C(CC([O-])=O)C(O)C([O-])=O)[O-]
 
* common name:
 
* common name:
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** ascorbate_peroxidase
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** D-threo-isocitrate
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** ORF
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* inchi key:
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* ec number:
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** InChIKey=ODBLHEXUDAPZAU-ZAFYKAAXSA-K
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** [http://enzyme.expasy.org/EC/1.11.1.7 EC-1.11.1.7]
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* molecular weight:
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** 189.101   
 
* Synonym(s):
 
* Synonym(s):
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** D-threo-isocitrate
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** (1R, 2S)-1-hydroxypropane-1,2,3-tricarboxylate
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** D-threo-isocitric acid
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** isocitric acid
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** isocitrate
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** threo-Ds-isocitrate
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** I-CIT
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** D-isocitrate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[CPD-8653]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''=>''' 1 [[CPD-8890]][c] '''+''' 2 [[WATER]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[ACONITATEHYDR-RXN]]
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** 1 betanidin[c] '''+''' 1 hydrogen peroxide[c] '''=>''' 1 betanidin quinone[c] '''+''' 2 H2O[c]
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* [[ISOCITDEH-RXN]]
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* [[RXN-14047]]
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== Genes associated with this reaction  ==
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* [[ISOCIT-CLEAV-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-9951]]
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* [[Tiso_gene_17551]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6431]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15820]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9359]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_5857]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_20206]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15962]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16028]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_19683]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_11016]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7067]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-5461]], betanidin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5461 PWY-5461]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* CAS : 320-77-4
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{{#set: common name=ascorbate_peroxidase}}
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* CAS : 30810-51-6
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{{#set: common name=ORF}}
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* BIGG : icit
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{{#set: ec number=EC-1.11.1.7}}
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* PUBCHEM:
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{{#set: gene associated=Tiso_gene_17551|Tiso_gene_6431|Tiso_gene_15820|Tiso_gene_9359|Tiso_gene_5857|Tiso_gene_20206|Tiso_gene_15962|Tiso_gene_16028|Tiso_gene_19683|Tiso_gene_11016|Tiso_gene_7067}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5459771 5459771]
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{{#set: in pathway=PWY-5461}}
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* KNAPSACK : C00001188
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{{#set: reconstruction category=orthology}}
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* HMDB : HMDB01874
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{{#set: reconstruction tool=pantograph}}
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* LIGAND-CPD:
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{{#set: reconstruction source=esiliculosus}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00451 C00451]
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{{#set: reconstruction category=annotation}}
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* CHEMSPIDER:
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{{#set: reconstruction tool=pathwaytools}}
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** [http://www.chemspider.com/Chemical-Structure.4573553.html 4573553]
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{{#set: reconstruction source=in-silico_annotation}}
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* CHEBI:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15562 15562]
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* METABOLIGHTS : MTBLC15562
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{{#set: smiles=C(=O)(C(CC([O-])=O)C(O)C([O-])=O)[O-]}}
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{{#set: common name=D-threo-isocitrate}}
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{{#set: inchi key=InChIKey=ODBLHEXUDAPZAU-ZAFYKAAXSA-K}}
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{{#set: molecular weight=189.101    }}
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{{#set: common name=D-threo-isocitrate|(1R, 2S)-1-hydroxypropane-1,2,3-tricarboxylate|D-threo-isocitric acid|isocitric acid|isocitrate|threo-Ds-isocitrate|I-CIT|D-isocitrate}}
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{{#set: reversible reaction associated=ACONITATEHYDR-RXN|ISOCITDEH-RXN|RXN-14047|ISOCIT-CLEAV-RXN|RXN-9951}}

Latest revision as of 20:16, 21 March 2018

Metabolite THREO-DS-ISO-CITRATE

  • smiles:
    • C(=O)(C(CC([O-])=O)C(O)C([O-])=O)[O-]
  • common name:
    • D-threo-isocitrate
  • inchi key:
    • InChIKey=ODBLHEXUDAPZAU-ZAFYKAAXSA-K
  • molecular weight:
    • 189.101
  • Synonym(s):
    • D-threo-isocitrate
    • (1R, 2S)-1-hydroxypropane-1,2,3-tricarboxylate
    • D-threo-isocitric acid
    • isocitric acid
    • isocitrate
    • threo-Ds-isocitrate
    • I-CIT
    • D-isocitrate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 320-77-4
  • CAS : 30810-51-6
  • BIGG : icit
  • PUBCHEM:
  • KNAPSACK : C00001188
  • HMDB : HMDB01874
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC15562
"C(=O)(C(CC([O-])=O)C(O)C([O-])=O)[O-" cannot be used as a page name in this wiki.



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