Difference between revisions of "Tiso gene 2693"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPHINGANINE-KINASE-RXN SPHINGANINE-KINASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [ht...")
(Created page with "Category:Gene == Gene Tiso_gene_2693 == * right end position: ** 9322 * transcription direction: ** POSITIVE * left end position: ** 5729 * centisome position: ** 30.83589...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPHINGANINE-KINASE-RXN SPHINGANINE-KINASE-RXN] ==
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== Gene Tiso_gene_2693 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 9322
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.7.1.91 EC-2.7.1.91]
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** POSITIVE
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* left end position:
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** 5729
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* centisome position:
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** 30.835892   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[DIHYDLIPACETRANS-RXN]]
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** 1 [[CPD-13612]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[CPD-649]][c]
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** Source: [[orthology-creinhardtii]]
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* With common name(s):
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* Reaction: [[PYRUVDEH-RXN]]
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** 1 D-erythro-sphinganine[c] '''+''' 1 ATP[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 sphinganine 1-phosphate[c]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12508]]
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* [[Tiso_gene_14560]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: ec-number
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* [[Tiso_gene_1163]]
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: ec-number
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== Pathways ==
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* Reaction: [[RXN-12583]]
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* [[PWY-5129]], sphingolipid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129]
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** Source: [[annotation-in-silico_annotation]]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY-7119]], sphingolipid recycling and degradation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7119 PWY-7119]
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** Source: [[annotation-experimental_annotation]]
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** '''5''' reactions found over '''11''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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* Reaction: [[RXN0-1133]]
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* [[orthology]]:
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]:
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*** Assignment: automated-name-match
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*** [[creinhardtii]]
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* Reaction: [[RXN0-1134]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PYRUVDEHYD-PWY]]
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* [[PWY-7218]]
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* [[PWY-7384]]
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* [[PWY-6886]]
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* [[PWY-5537]]
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* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]]
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* [[PWY-5482]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=9322}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15465 15465]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=5729}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02976 R02976]
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{{#set: centisome position=30.835892    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=DIHYDLIPACETRANS-RXN|PYRUVDEH-RXN|RXN-12508|RXN-12583|RXN0-1133|RXN0-1134}}
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{{#set: ec number=EC-2.7.1.91}}
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{{#set: pathway associated=PYRUVDEHYD-PWY|PWY-7218|PWY-7384|PWY-6886|PWY-5537|GLYCOLYSIS-TCA-GLYOX-BYPASS|PWY-5482}}
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{{#set: gene associated=Tiso_gene_14560|Tiso_gene_1163}}
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{{#set: in pathway=PWY-5129|PWY-7119}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii}}
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Latest revision as of 20:21, 21 March 2018

Gene Tiso_gene_2693

  • right end position:
    • 9322
  • transcription direction:
    • POSITIVE
  • left end position:
    • 5729
  • centisome position:
    • 30.835892
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2693&oldid=48119"