|
|
| (One intermediate revision by the same user not shown) |
| Line 1: |
Line 1: |
| − | [[Category:Reaction]] | + | {{#ask: [[Category:Reaction]] [[reconstruction source::orthology-athaliana]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] ==
| + | | ?COMMON NAME |
| − | * direction:
| + | | ?ec number |
| − | ** LEFT-TO-RIGHT
| + | | ?reconstruction category |
| − | * common name:
| + | | ?reconstruction tool |
| − | ** pentafunctional_protein
| + | | ?reconstruction source |
| − | * ec number:
| + | | ?reconstruction comment |
| − | ** [http://enzyme.expasy.org/EC/1.1.1.25 EC-1.1.1.25]
| + | | ?gene associated |
| − | * Synonym(s):
| + | | ?in pathway |
| − | | + | }} |
| − | == Reaction Formula ==
| + | |
| − | * With identifiers:
| + | |
| − | ** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''=>''' 1 [[SHIKIMATE]][c] '''+''' 1 [[NADP]][c]
| + | |
| − | * With common name(s):
| + | |
| − | ** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 3-dehydroshikimate[c] '''=>''' 1 shikimate[c] '''+''' 1 NADP+[c]
| + | |
| − | | + | |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * [[Tiso_gene_5753]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | * [[Tiso_gene_5752]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | == Pathways ==
| + | |
| − | * [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
| + | |
| − | ** '''6''' reactions found over '''6''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[orthology]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | * Category: [[manual]]
| + | |
| − | ** Source: [[manual-primary_network]]
| + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| − | == External links ==
| + | |
| − | * RHEA:
| + | |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17737 17737]
| + | |
| − | * LIGAND-RXN:
| + | |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
| + | |
| − | * UNIPROT:
| + | |
| − | ** [http://www.uniprot.org/uniprot/P07547 P07547]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P08566 P08566]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q58484 Q58484]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q44606 Q44606]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q44608 Q44608]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q44609 Q44609]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q44610 Q44610]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q44611 Q44611]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q44612 Q44612]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P15770 P15770]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q42947 Q42947]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O65917 O65917]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}}
| + | |
| − | {{#set: common name=pentafunctional_protein}}
| + | |
| − | {{#set: ec number=EC-1.1.1.25}}
| + | |
| − | {{#set: gene associated=Tiso_gene_5753|Tiso_gene_5752}}
| + | |
| − | {{#set: in pathway=PWY-6163}}
| + | |
| − | {{#set: reconstruction category=orthology|manual|annotation}}
| + | |
| − | {{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
| + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |
