Difference between revisions of "Main Page"
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(Created page with "== TISOGEM description == == Automatic reconstruction with [http://aureme.genouest.org AuReMe] == Model summary: summary Download '''AuReMe''' Input/Out...") |
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** Download this [[MEDIA:Reaction_creator.csv|form]] | ** Download this [[MEDIA:Reaction_creator.csv|form]] | ||
* '''Follow the examples given in the form(s) to correctly share your suggestions''' | * '''Follow the examples given in the form(s) to correctly share your suggestions''' | ||
| − | * Send the filled form(s) to: | + | * Send the filled form(s) to: gem-aureme@inria.fr |
Latest revision as of 13:11, 16 November 2018
TISOGEM description
Automatic reconstruction with AuReMe
Model summary: summary
Download AuReMe Input/Output [LINK OR MEDIA data]
The automatic reconstruction of Tisocrysis_lutea results to a Genome scale Model containing 2799 reactions, 2747 metabolites, 2728 genes and 1212 pathways. This GeM was obtained based on the following sources:
- Based on annotation data:
- Tool: Pathway tools
- Creation of a metabolic network containing 2568 reactions
- Tool: Pathway tools
- Based on orthology data:
- Tool: Pantograph
- From template CREINHARDTII creation of a metabolic network containing: 558 reactions
- From template SYNECHOCYSTIS creation of a metabolic network containing: 260 reactions
- From template ATHALIANA creation of a metabolic network containing: 419 reactions
- From template ESILICULOSUS creation of a metabolic network containing: 1191 reactions
- Tool: Pantograph
- Based on expertise:
- 317 reaction(s) added
- Based on gap-filling:
- Tool: meneco
- 17 reaction(s) added
- Tool: meneco
