Difference between revisions of "RXN-9520"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9520 RXN-9520] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9520 RXN-9520] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** C4 photosynthetic carbon assimilation cycle, NAD-ME type
+
** polyketide_synthase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
−
** C4 photosynthesis, NAD-ME type
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''7''' reactions found over '''9''' reactions in the full pathway
+
* With identifiers:
−
* [[1.1.1.39-RXN]]
+
** 1 [[R-3-hydroxyhexanoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Hex-2-enoyl-ACPs]][c]
−
* [[ALANINE-AMINOTRANSFERASE-RXN]]
+
* With common name(s):
−
* [[ASPAMINOTRANS-RXN]]
+
** 1 a (3R)-3-hydroxyhexanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a trans hex-2-enoyl-[acp][c]
−
* [[MALATE-DEH-RXN]]
+
 
−
* [[RXN-13697]]
+
== Genes associated with this reaction  ==
−
* [[RXN-13698]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[RXN0-5224]]
+
* Gene: [[Tiso_gene_135]]
−
== Reaction(s) not found ==
+
** Source: [[annotation-in-silico_annotation]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
+
*** Assignment: EC-NUMBER
−
* [http://metacyc.org/META/NEW-IMAGE?object=PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN]
+
* Gene: [[Tiso_gene_10876]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6884]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-33090}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=C4 photosynthetic carbon assimilation cycle, NAD-ME type}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: common name=C4 photosynthesis, NAD-ME type}}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: reaction found=7}}
+
{{#set: ec number=EC-2.3.1.85}}
−
{{#set: reaction not found=9}}
+
{{#set: ec number=EC-4.2.1.59}}
−
{{#set: completion rate=78.0}}
+
{{#set: gene associated=Tiso_gene_135|Tiso_gene_10876|Tiso_gene_13394|Tiso_gene_6884|Tiso_gene_500|Tiso_gene_136}}
 +
{{#set: in pathway=PWY-5971|PWY-5994}}
 +
{{#set: reconstruction category=manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:05, 21 March 2018

Reaction RXN-9520

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9520&oldid=39435"